YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|226901503, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKNPMDVIK KKHWWQSDAL KWSVLGLLGL LVGYLVVLMY AQGEYLFAIT TLILSSAGLY  60
   61 IFANRKAYAW RYVYPGMAGM GLFVLFPLVC TIAIAFTNYS STNQLTFERA QEVLLDRSWQ 120
  121 AGKIYNFGLY PAGDEWQLAL SDGETGKNYL SDAFKFGGEQ KLQLKETTAQ PEGERANLRV 180
  181 ITQNRQALSD ITAILPDGNK VMMSSLRQFS GTQPLYTLDG DGTLTNNQSG VKYRPNNQIG 240
  241 FYQSITADGH WGDEKLSPGY TVTTGWKNFT RVFTDEGIQK PFLAIFVWTV VFSLITVFLT 300
  301 VAVGMVLACL VQWEALRGKA VYRVLLILPY AVPSFISILI FKGLFNQSFG EINMMLSALF 360
  361 GVKPAWFSDP TTARTMLIIV NTWLGYPYMM ILCMGLLKAI PDDLYEASAM DGAGPFQNFF 420
  421 KITLPLLIKP LTPLMIASFA FNFNNFVLIQ LLTNGGPDRL GTTTPAGYTD LLVNYTYRIA 480
  481 FEGGGGQDFG LAAAIATLIF LLVGALAIVN LKATRMKFD

Type	Start	End	Confidence
Cytoplasmic	1	18	0.98
Transmembrane Helix	19	38	0.95
Non-Cytoplasmic	39	44	0.77
Transmembrane Helix	45	64	0.93
Cytoplasmic	65	72	0.89
Transmembrane Helix	73	97	0.89
Non-Cytoplasmic	98	284	0.99
Transmembrane Helix	285	311	0.88
Cytoplasmic	312	320	0.90
Transmembrane Helix	321	345	0.86
Non-Cytoplasmic	346	374	0.79
Transmembrane Helix	375	397	0.77
Cytoplasmic	398	425	0.75
Transmembrane Helix	426	448	0.72
Non-Cytoplasmic	449	488	0.91
Transmembrane Helix	489	511	0.91
Cytoplasmic	512	519	0.90