YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|226902786, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.85
Transmembrane Helix	125	146	0.86
Non-Cytoplasmic	147	164	0.73
Transmembrane Helix	165	186	0.92
Cytoplasmic	187	193	0.79
Transmembrane Helix	194	215	0.88
Non-Cytoplasmic	216	232	0.85
Transmembrane Helix	233	254	0.90
Cytoplasmic	255	269	0.87
Transmembrane Helix	270	291	0.89
Non-Cytoplasmic	292	308	0.63
Transmembrane Helix	309	335	0.78
Cytoplasmic	336	343	0.49
Transmembrane Helix	344	371	0.74
Non-Cytoplasmic	372	378	0.58
Transmembrane Helix	379	400	0.79
Cytoplasmic	401	405	0.64
Transmembrane Helix	406	427	0.88
Non-Cytoplasmic	428	452	0.65
Transmembrane Helix	453	477	0.88
Cytoplasmic	478	649	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDSRQAVFF RFFFGVLPQS GRGQVMTELA RTIVAGVGGA DNIVSLMHCA TRLRFKLKDE  60
   61 SKAQAEVLKK TPGIIMVVES GGQFQVVIGN HVADVFLAVN SVAGLGEKAQ QAPENDDKDN 120
  121 LLNRFFYVIS GIFTPLIGLM AATGILKGML ALALTFQWAT EQSGTYLILF SASDALFWFF 180
  181 PIILGYTAGK RFSGNPFTAM VIGGALVHPL ILTAFENGQK VDALGLDFLG IPVTLLNYSS 240
  241 SVIPIIFSAW LCSILERRLN TWLPSAIKNF FTPLLCLMVI TPITFLLVGP LSTWISELIA 300
  301 AGYLWLYQAV PAFAGAVMGG FWQIFVMFGL HWGLIPLIIN NFTVLGYDTM IPLLMPAIMA 360
  361 QVGAALGVFL CERDAQKKVV AGSAALTGLF GITEPAVYGV NLPRKYPFVI ACISGALGAT 420
  421 IIGYAQTKVY SFGLPGIFTF MQTIPSTGID FTVWASVIGG VIAIGCAFVG TVMFHFITAK 480
  481 RQPAQVAQQE KTPEVITPEQ GGICSPMTGE IVPLIHVADT TFASGLLGKG IAILPSVGEV 540
  541 RSPVAGQIAS LFATLHAIGI ESDDGVEILI HVGIDTVKLD GKFFSAHVNV GDKVNTGDRL 600
  601 ISFDIPAIRE AGFDLTTPVL ISNSDDFTDV LPHGTAQINA GEPLLSIIR