YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91074458, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	281	0.94
Transmembrane Helix	282	304	0.87
Non-Cytoplasmic	305	312	0.61
Transmembrane Helix	313	331	0.81
Cytoplasmic	332	340	0.57
Transmembrane Helix	341	367	0.76
Non-Cytoplasmic	368	396	0.79
Transmembrane Helix	397	415	0.86
Cytoplasmic	416	427	0.80
Transmembrane Helix	428	450	0.90
Non-Cytoplasmic	451	456	0.77
Transmembrane Helix	457	479	0.89
Cytoplasmic	480	516	0.94
Transmembrane Helix	517	538	0.85
Non-Cytoplasmic	539	664	0.98
Transmembrane Helix	665	688	0.89
Cytoplasmic	689	695	0.88
Transmembrane Helix	696	718	0.89
Non-Cytoplasmic	719	725	0.77
Transmembrane Helix	726	746	0.93
Cytoplasmic	747	777	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITTMKKLTI GLIGNPNSGK TTLFNQLTGS RQRVGNWAGV TVERKEGQFS TTDHQVTLVD  60
   61 LPGTYSLTTI SSQTSLDEQI ACHYILSGDA DLLINVVDAS NLERNLYLTL QLLELGIPCI 120
  121 VALNMLDIAE KQNIRIEIDA LSARLGCPVI PLVSTRGRGI EALKLAIDRY KANENVELVH 180
  181 YAQPLLNEAD SLAKVMPSDI PLKQRRWLGL QMLEGDIYSR AYAGEASQHL DAALARLRNE 240
  241 MDDPALHIAD ARYQCIAAIC DVVSNTLTAE PSRFTTAVDK IVLNRFLGLP IFLFVMYLMF 300
  301 LLAINIGGAL QPLFDVGSVA LFVHGIQWIG YTLHFPDWLT IFLAQGLGGG INTVLPLVPQ 360
  361 IGMMYLFLSF LEDSGYMARA AFVMDRLMQA LGLPGKSFVP LIVGFGCNVP SVMGARTLDA 420
  421 PRERLMTIMM APFMSCGARL AIFAVFAAAF FGQNGALAVF SLYMLGIVMA VLTGLMLKYT 480
  481 IMRGEATPFV MELPVYHVPH VKSLVIQTWQ RLKGFVLRAG KVIIIVSIFL SAFNSFSLSG 540
  541 KIVDNINDSA LASVSRVITP VFKPIGVHED NWQATVGLFT GAMAKEVVVG TLNTLYTAEN 600
  601 IQDEEFNPAE FNLGEELFSA VDETWQSLKD TFSLSVLMNP IEASKGDGEM GTGAMGVMDQ 660
  661 KFGSAAAAYS YLIFVLLYVP CISVMGAIAR ESSRGWMGFS ILWGLNIAYS LATLFYQVAS 720
  721 YSQHPTYSLV CILAVILFNI VVIGLLRRAR SRVDVELLAT RKSVSSCCAA STTGDCH