YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91211749, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKCLPWWQG VRTTENIMMQ DLRLILIIVG AIAIIALLVH GFWTSRKERS SMFRDRPLKR  60
   61 MKSKRDDDSY DEDVEDDEGV GEVRVHRVNH APANAQEHEA ARPSPQHQYQ PPYASAQPRQ 120
  121 PVQQPPEAQV PPQHAPRPAQ PVQQPVQQPA YQPQPEQPLQ QPVSPQVASA PQPVHSAPQP 180
  181 AQQAFQPAEP VAAPQPEPVA EPAPVMDKPK RKEAVIIMNV AAHHGSELNG ELLLNSIQQA 240
  241 GFIFGDMNIY HRHLSPDGSG PALFSLANMV KPGTFDPEMK DFTTPGVTIF MQVPSYGDEL 300
  301 QNFKLMLQSA QHIADEVGGV VLDDQRRMMT PQKLREYQDI IREVKDANA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	44	0.92
Non-Cytoplasmic	45	349	0.93