YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115512913, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPDTGKPSS IKPMEGNIMR IGIPRERLTN ETRVAATPKT VEQLLKLGFT VAVESGAGQL  60
   61 ASFDDKAFVQ AGAEIVEGNS VWQSEIILKV NAPLDDEIAL LNPGTTLVSF IWPAQNPELM 120
  121 QKLAERNVTV MAMDSVPRIS RAQSLDALSS MANIAGYRAI VEAAHEFGRF FTGQITAAGK 180
  181 VPPAKVMVIG AGVAGLAAIG AANSLGAIVR AFDTRPEVKE QVQSMGAEFL ELDFKEEAGS 240
  241 GDGYAKVMSD AFIKAEMELF AAQAKEVDII VTTALIPGKP APKLITREMV DSMKAGSVIV 300
  301 DLAAQNGGNC EYTVPGEIFT TENGVKVIGY TDLPGRLPTQ SSQLYGTNLV NLLKLLCKEK 360
  361 DGNITVDFDD VVIRGVTVIR AGEITWPAPP IQVSAQPQAA QKAAPEVKTE EKCACSPWRK 420
  421 YALMALAIIL FGWMASVAPK EFLGHFTVFA LACVVGYYVV WNVSHALHTP LMSVTNAISG 480
  481 IIVVGALLQI GQGGWVSFLS FIAVLIASIN IFGGFTVTQR MLKMFRKN

Type	Start	End	Confidence
Cytoplasmic	1	146	0.68
Transmembrane Helix	147	161	0.40
Non-Cytoplasmic	162	185	0.66
Transmembrane Helix	186	209	0.68
Cytoplasmic	210	417	0.98
Transmembrane Helix	418	437	0.89
Non-Cytoplasmic	438	441	0.89
Transmembrane Helix	442	461	0.93
Cytoplasmic	462	470	0.76
Transmembrane Helix	471	490	0.93
Non-Cytoplasmic	491	497	0.72
Transmembrane Helix	498	518	0.94
Cytoplasmic	519	528	0.92