YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91210161, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKIKYWLIV GFIILFAIFY IAISDRDSTL SRLKSAGENG DVEAQYALGL MYLYGEILDV  60
   61 DYQQAKIWYE KAADQNDPRA QAKLGVMYAN GLGVNQDYQQ SKLWYEKAAA QNDVDAQFLL 120
  121 GEMYDDGLGV SQDYQHAKMW YEKAAAQNDE RAQVNLAVLY AKGNGVEQDY RQAKSWYEKA 180
  181 AAQNSPDAQF ALGILYANAN GVEQDYQQAK DWYEKAAEQN FANAQFNLGM LYYKGEGVKQ 240
  241 NFRQAREWFE KAASQNQLNA QYNLGQIYYY GQGVTQSYRQ AKYWFEKAAE KGHVDAQYNL 300
  301 GVIYENGEGV SQNYQQAKAW YEKAASQNDA QAQFELGVMN ELGQGESIDL KQARHYYERS 360
  361 CNNGLKKGCE RLKELLDK

Type	Start	End	Confidence
Cytoplasmic	1	5	0.86
Transmembrane Helix	6	23	0.93
Non-Cytoplasmic	24	378	0.97