YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91210078, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDMKSGNIS MKAILIPFLS LLIPLTPKFA FAQSEPELKL ESVVIVSRHG VRAPTKATQL  60
   61 MQDVTPDAWP TWPVKLGWLT PRGGELIAYL GHYQRQRLVA DGLLAKEGCP QPGQVAVIAD 120
  121 VDERTRKTGE AFAAGLAPDC AITVHTQADT SSPDPLFNPL KTGVCQLDNA NVTDAILSRA 180
  181 GGSIADFTGH RQTAFRELER VLNFPQSNLC LNRKKQDESC SLTQALPSEL KVSADNVSLT 240
  241 GAVSLASMLT EIFLLQQAQG MPEPGWGRIT DSHQWNTLLS LHNAQFYLLQ RTPEVARSRA 300
  301 TPLLDLIMTA LAPHPPQKQV YGVTLPTSVL FIAGHDTNLA NLGGALELNW TLPGQPDNTP 360
  361 PGGELVFERW RRLSDNSQWI QVSLVFQTLQ QMRDKTPLSL NTPPGEVKLT LAGCEERNAR 420
  421 GMCSLAGFTQ IVNEARIPAC ALHQDK

Type	Start	End	Confidence
Signal Peptide	1	32	0.96
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	446	0.99