YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SY112_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL  60
   61 IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT ISRKANTVKT LIETLEKRNV 120
  121 ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE 180
  181 PSNEDMEKMI SGSGSCSDLV KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL 240
  241 VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS 300
  301 MLASR

Type	Start	End	Confidence
Cytoplasmic	1	281	0.84
Transmembrane Helix	282	303	0.96
Non-Cytoplasmic	304	305	0.74