YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91805675
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIKTSPPTL FSIGLASPTM LAAVYGSAPL PRGFLGFLLL GGPLLGLFVY LQPILGFGSP  60
   61 FSPLVWPRSV TLKSLISPLE LISRLSALIG YGLRLSHLSI SMVLVCNFIS RTLANCNSSS 120
  121 ASSSHQSFRL MDLVYLGFRY AIRLENNGIM ISSLRRGGYR NFFNPLSPNP LNIESEPYLS 180
  181 NIFKIDIHES KDLRSYGIMR PALWSSAYQM LLNSIPLNPP GDRTHSTPLL VDDHFLLNLP 240
  241 GTARISTLRI FSMSPHLLWT VTITSSTALF VDDVLTTRAL TGTSRLRSIG PQVSWILCRF 300
  301 IFAIFV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.70
Transmembrane Helix	9	28	0.85
Non-Cytoplasmic	29	34	0.56
Transmembrane Helix	35	61	0.72
Cytoplasmic	62	90	0.51
Transmembrane Helix	91	114	0.54
Non-Cytoplasmic	115	306	0.56