YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56118085
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIICGLPLL GCIYCLACAR WAWNRCLHTA GHDSVTWGLA TAEEFEPVPR LCRYILAVYE  60
   61 DNIRHPLWEP PGGYGINPDW LILRKTYKDT RGRAPSYILY LDHEHSDIVL AIRGLNLAKE 120
  121 SDYQVLLDNQ LGKRKFDGGY VHNGLLKAAG WVLEAECDIL KELVEKHPNY TLTFAGHSLG 180
  181 SGVAAMLALV VVRHHDKLGN IDRRRIRCYA IAPARCMSLN LAVRYADVTN SVVLQDDFLP 240
  241 RTATPLEDIF KSVFCLPCLL CMRCMRDTCI PEEKMLRGPR RLYAPGRLYH IVERKPFRLG 300
  301 RFPPVVRTAV PVDGRFEHIV LSCNATSDHA IIWIEREARR AMDLMLEKDR IMEIPAKQRM 360
  361 ERQETLTKEH KQEYKAALQR AVSLSVPHAY PPPSEYGTFD ESEDVEKYNS CKLSSESSVG 420
  421 SSGKSKSKVS WNELIERLFD RDESGHMVLK KSHRDDW

Type	Start	End	Confidence
Signal Peptide	1	19	0.93
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	457	0.94