YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190336789, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLVYIVLE LVIAVLAVAG NVLVCWAVCL NSNLQSITNF FVVSLAVADI AVGVLAIPFA  60
   61 VTISIGFCSN FHGCLFIACF VLVLTQSSVF SLLAIAVDRY IAIKIPLRYN SLVTGRRAKG 120
  121 IIAVCWILSV VIGLTPMFGW NTSIDAGTNS SCPQGMTECL FEKVVTMGYM VYFNFFGCIL 180
  181 IPLFAMLAIY TWIFTAARRQ LRQMEQKLAH LQGHAHKEGS SSRSTLQKEV HAAKSLAIIV 240
  241 GLFAVCWLPL HIINCFTLFC PQCDRPQDWV MYLAIILSHA NSVVNPFIYA YRIRDFRQTF 300
  301 RRIIRRHFLW HESRLAIGNS NGGMTASSAA VSVIETSCTM SNGYVMDAAN PIPGMISCDN 360
  361 FTKELPAKIK PQEEFQDLGY SLNGSLDHSF NANSTPIFSS HSREEVSSIR DHVEITTVKD 420
  421 CSDFTHVQDR CLMPVRTSNS SGLAEVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.92
Transmembrane Helix	7	30	0.91
Cytoplasmic	31	39	0.83
Transmembrane Helix	40	62	0.91
Non-Cytoplasmic	63	73	0.74
Transmembrane Helix	74	97	0.92
Cytoplasmic	98	117	0.91
Transmembrane Helix	118	140	0.89
Non-Cytoplasmic	141	170	0.97
Transmembrane Helix	171	194	0.91
Cytoplasmic	195	231	0.96
Transmembrane Helix	232	253	0.89
Non-Cytoplasmic	254	269	0.86
Transmembrane Helix	270	293	0.86
Cytoplasmic	294	447	0.66