YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91094247
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.99
Transmembrane Helix	62	83	0.89
Non-Cytoplasmic	84	92	0.80
Transmembrane Helix	93	111	0.95
Cytoplasmic	112	135	0.79
Transmembrane Helix	136	155	0.83
Non-Cytoplasmic	156	224	0.91
Transmembrane Helix	225	245	0.93
Cytoplasmic	246	254	0.84
Transmembrane Helix	255	276	0.92
Non-Cytoplasmic	277	302	0.85
Transmembrane Helix	303	324	0.87
Cytoplasmic	325	340	0.78
Transmembrane Helix	341	362	0.89
Non-Cytoplasmic	363	385	0.88
Transmembrane Helix	386	409	0.79
Cytoplasmic	410	436	0.87
Transmembrane Helix	437	459	0.90
Non-Cytoplasmic	460	470	0.76
Transmembrane Helix	471	491	0.97
Cytoplasmic	492	511	0.95
Transmembrane Helix	512	532	0.95
Non-Cytoplasmic	533	549	0.94
Transmembrane Helix	550	572	0.90
Cytoplasmic	573	604	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAEGDCKE NSHPPSENCK KSPLKSKECK NSKLQQPPKD PTRVVVVALT PDRRRETWNK  60
   61 KVEFLLAVVG FAVDLGNVWR FPYICYQNGG GAFLIPYTIM LVFGGLPLFY MELALGQFHR 120
  121 SGCLTIWKRI CPALKGIGYA ICLIDIYMGM YYNTIIGWAV YYLIASFQAE LPWTSCHNYW 180
  181 NTKDCRPVTA LVGVNSNASS PAKEFFEREV LEQYKSDGLN RMGPIKPALA LCVFAVFVLV 240
  241 YFSLWKGVRS TGKAVWITAL APYVVLIILL CRGVTLPGAA EGIRYYLTPE WHKLNNSRVW 300
  301 IDAASQIFFS LGPGFGTLLA LSSYNKFNNN CYRDALLTSS INCLTSFLAG FVIFSVLGYM 360
  361 AHVQHKSIEM VGLEGPGLVF IVYPEAIATM TGSVFWSIIF FLMLITLGLD STFGGLEAMI 420
  421 TALCDEYPKA LGRHREIFVA ALLFGIYICA LPTTTYGGVY LVNMLNVYGP GLAILFVVFV 480
  481 EAAGVCWLYG TDNFARDIEK MIGHKPGIFW RMCWKYISPV FLLSIFIFSL LSHEQMLGTE 540
  541 YEYPEWSFKV GYALTASSIM CIPLYIVYKF AITPGSLVQR WKMIWKPEHS SDNSTLTYCG 600
  601 GTEV