YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91094203
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.89
Transmembrane Helix	55	76	0.90
Non-Cytoplasmic	77	84	0.70
Transmembrane Helix	85	103	0.95
Cytoplasmic	104	113	0.72
Transmembrane Helix	114	133	0.65
Non-Cytoplasmic	134	160	0.66
Transmembrane Helix	161	185	0.87
Cytoplasmic	186	196	0.86
Transmembrane Helix	197	219	0.90
Non-Cytoplasmic	220	249	0.95
Transmembrane Helix	250	272	0.89
Cytoplasmic	273	279	0.78
Transmembrane Helix	280	295	0.94
Non-Cytoplasmic	296	300	0.81
Transmembrane Helix	301	321	0.90
Cytoplasmic	322	328	0.92
Transmembrane Helix	329	351	0.89
Non-Cytoplasmic	352	744	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQIMLIIAA AHLVYCPFTK VEESFNLQAM HDILYHKWNL SQYDHLEFPG VVPRTFIGPL  60
   61 FISILVAPIV SLLQLFEINK FWAQYIVRFA LGGCVIAAFH VLSRTLAKIF GPKWQLWFMA 120
  121 VTVTQSHFMF YLSRPLPNIF ALPLVLLALN SWLKGDSKQF ILLSGAAIII FRAELALFLG 180
  181 LLLLYDLINK RITLKRFFQV ALPAGVAFLL LSVVIDSIFW NRPLWPEGEV LWYNTVLNKS 240
  241 SNWGTSPFFW YFYSAIPRGM ATSVFLIPLG LYFDERVRKL CVPTLLFVLL FSFLPHKELR 300
  301 FIIYVFPFLN ATAATACHRI WENRNKSPIY HLLSLGVCGH LAVNVFFTLF LLSISGTNYP 360
  361 GGTAISHLHR LAKDEANVSV HIANLAAQTG VSRFTQINPN WTYSKVEGVM AGAPEMYEYT 420
  421 HLIAEARSKF SPNLKPYAST HDIIDTIEAF HQLSFNYLTI PPIKIKTRPV LFILKRRENY 480
  481 REFLQMRNYD FEDGMLEETI IEDESQEEEK IQEAESEQNV TIDEVIVPKN EETNVTNTTS 540
  541 FEDVKNETKS EVVKKQSKPI NVTKKLKPVE DKPLNSTEER QTVRRNIKKL IQKYRRKKES 600
  601 DGELESKPKD TIKKIIEEEK MKQAEEELSK IQQQIFDIIE TNPNIINKKL IKQRLRETIT 660
  661 SEFMNVKKLK RVKAKPRQVD DSAVDFYEPP QDEVKEPTPE TEDEEKLNQM SERFLEASKK 720
  721 IADIMTIIDE IVDTMEISED SEEV