YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91090644
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.91
Transmembrane Helix	10	30	0.87
Non-Cytoplasmic	31	43	0.82
Transmembrane Helix	44	65	0.91
Cytoplasmic	66	74	0.87
Transmembrane Helix	75	96	0.91
Non-Cytoplasmic	97	105	0.70
Transmembrane Helix	106	124	0.93
Cytoplasmic	125	130	0.88
Transmembrane Helix	131	150	0.92
Non-Cytoplasmic	151	155	0.78
Transmembrane Helix	156	176	0.90
Cytoplasmic	177	189	0.81
Transmembrane Helix	190	209	0.89
Non-Cytoplasmic	210	238	0.85
Transmembrane Helix	239	259	0.88
Cytoplasmic	260	266	0.75
Transmembrane Helix	267	293	0.80
Non-Cytoplasmic	294	368	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADRKHTREI LTVLILCVLW YVVSSSNNVI GKTLLNEFPY PMTMTMVQLL SITVFSGPLF  60
   61 NLWGIRKYAD ISWRYYFTLI VPLAFGKFIA SVFSHVSIWK VPVSYAHTVK ATMPLFTVVL 120
  121 SRILMKEKQT LRVYFSLIPI ITGVAIATIT EISFDVIGLI SALVATMGFS LMNIFSKKVL 180
  181 HDTNVHHLRL LHILGRLALV MFLPVWVLVD MFRLLKDDTV KYHDYRVIGL LIMDGVLNWL 240
  241 QNIIAFSVLS LVTPLTYAVA NASKRIFVIA VSLFILGNPV TGTNVFGMLL AIFGVLLYNK 300
  301 AKYDAKQAEK KQTILPYSQN SWQDRTGYTV LQNSEPVKPA NGFTVVNGSN NNSFVYNSKS 360
  361 SSSNLLFV