YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91089581
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.96
Transmembrane Helix	92	112	0.84
Non-Cytoplasmic	113	120	0.68
Transmembrane Helix	121	141	0.83
Cytoplasmic	142	166	0.73
Transmembrane Helix	167	191	0.86
Non-Cytoplasmic	192	244	0.64
Transmembrane Helix	245	265	0.88
Cytoplasmic	266	284	0.90
Transmembrane Helix	285	308	0.85
Non-Cytoplasmic	309	347	0.87
Transmembrane Helix	348	365	0.66
Cytoplasmic	366	422	0.69
Transmembrane Helix	423	443	0.88
Non-Cytoplasmic	444	449	0.56
Transmembrane Helix	450	468	0.91
Cytoplasmic	469	481	0.71
Transmembrane Helix	482	509	0.79
Non-Cytoplasmic	510	642	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTERDLQGE GGGGPNVFGN PTLSISSTSV DIDRQEQFKG SNDFILVEEN NKNADSLKTW  60
   61 LTTKAKNACT KKMLHRRIPI LNWLPKYDSE SAVGDLVAGI TVGLTVIPQA LAYSNIAGLP 120
  121 AHYGLYSSFL GCFIYIIFGS CKDVPMGPTA IASLLTFQAI NGRGPQHAIL LCFLTGIVQI 180
  181 LMGFFGLGFL IDFVSGPVSS GFTSAVALII VTSQIKDVLG IKGSGTTFVS TWRSLFQDIH 240
  241 NTNPWDSVFG ICCIAVLLIM RVVTNLKVGS STGELSKFQK IVNKTIWLIG TSRNAILVIV 300
  301 CGFIGYSFCL NGEPPFKVIG HVPQGLPTVQ PPPFSYNGTN TTETFWDMMS DLSSGIVVVP 360
  361 LIGLLEDISI CKAFANGKAV DATQELLAIG ISNIANSFVQ AFPGSGSLSR SAVQNSSGVR 420
  421 TPLSGLYTGI LVITALLFFT PYFYYIPKSS LAAIIIAAVI FMVEVKVVKP MWRTKKSDLI 480
  481 PGLGTFIACL VLPLEYGILI GIGINLLFIL YHAARPKITV EKLTSHEGVE YLMLTPDRCL 540
  541 IFPSVDYVRN LVTKHSIRQG IPVVIDCSHI YGADYTAATV IEVLTQDFAA RDQPLFFYNL 600
  601 KPSVSSVFEG LSPKEFVVYY NREDIDELLR NKSYIKKQIF NI