YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91087277
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFKISSIF VNKLLRRCHF RTCINLDWNI SVNYIQGTSH SKFFCTTSNK ENEEYTRHKT  60
   61 LVKDEFKAYI RQNTEKLRDT EQKLKQKGTV ILQDIKETTD KVKGKVEEVI ERENIYTIPN 120
  121 FLCVSRILIS PYLGVLIVQA NFDFALAVLG IAAVTDLLDG WIARTWESQS SKVGSFLDPM 180
  181 ADKVLIATLF LTLTYADLIP IALTSLIVLR DVCLVTAGFV IRYRSLPPPR TLSRYFDATH 240
  241 ATAQLAPTFI SKVNTGVQLL LVGSTLAAPV FHYVGHPALE CLWYITGATT LAAGFSYIFS 300
  301 KNTYRILKKV PKK

Type	Start	End	Confidence
Cytoplasmic	1	131	0.89
Transmembrane Helix	132	155	0.75
Non-Cytoplasmic	156	197	0.57
Transmembrane Helix	198	221	0.71
Cytoplasmic	222	254	0.85
Transmembrane Helix	255	274	0.86
Non-Cytoplasmic	275	280	0.82
Transmembrane Helix	281	300	0.93
Cytoplasmic	301	313	0.91