YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91087161
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	184	0.95
Transmembrane Helix	185	204	0.85
Non-Cytoplasmic	205	213	0.81
Transmembrane Helix	214	235	0.90
Cytoplasmic	236	252	0.85
Transmembrane Helix	253	279	0.82
Non-Cytoplasmic	280	356	0.94
Transmembrane Helix	357	378	0.91
Cytoplasmic	379	386	0.87
Transmembrane Helix	387	409	0.85
Non-Cytoplasmic	410	437	0.82
Transmembrane Helix	438	457	0.90
Cytoplasmic	458	467	0.80
Transmembrane Helix	468	492	0.87
Non-Cytoplasmic	493	531	0.90
Transmembrane Helix	532	553	0.89
Cytoplasmic	554	572	0.91
Transmembrane Helix	573	596	0.90
Non-Cytoplasmic	597	604	0.85
Transmembrane Helix	605	627	0.95
Cytoplasmic	628	647	0.94
Transmembrane Helix	648	667	0.97
Non-Cytoplasmic	668	684	0.94
Transmembrane Helix	685	707	0.91
Cytoplasmic	708	747	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTNIYENL PLKKLGDSET SKNLISEIKQ KKRKSTPDIQ KVSSQNNISK KAKSSRSISE  60
   61 MLFNRSDDKS DENLSAGEKS NGEDSCKKIQ STPTSTLDDG YESCNSTPLV SGRAKPTKQH 120
  121 SNQATNLVLT CTLRKKDLHV QLEEDEKGYE SFVLSTSSSQ AGEVDPDSPT VPDDARETWG 180
  181 SSADFLLSII GFAVDLANVW RFPYLCYKNG GGAFLVPYTL MLVFGAVPLF YMELILGQFN 240
  241 RQGPISLWRI CPLFKGVGFC AVLVAFYVSF YYNVIIAWAL YFLGTSFSPD LPWLHCNNTW 300
  301 NTEKCWESML PGASNVTTRP PVFNDTTPTN RHTPASEFFH RAVLEMQWSD GLHEMGYPKW 360
  361 QLVLCLMIVY VMLYISLFKG VKSSGKVVWV TATMPYVVLT ILLIRGLMLP GAAMGISYYL 420
  421 KPELSKLRET QVWVDAAVQI FYSVGAGFGV HLSYASYNTF HNNCFRDCIV TTAVNCFTSF 480
  481 FSGFVIFTYL GFMSYKQGVH ISTVATEGPG LVFQVYPEAV ATLPGSHFWS MLFFFMLIML 540
  541 GLDSAMGGLE CVITGLMDEY SNFFKSRKHS REIFTLGVII VSFSVALINV TPGGIYTFNL 600
  601 FDTYSAGISL LCSALFEAIA VSWFYGLDRF TQDVEAMIGT RPGLYWRICW KFVSPTFIIM 660
  661 VVLFGLLNPQ PLKYNDYFYP KWAEWVGWSL ALSSIIMIPL VAVLQLIKTE GTFKEKLAIS 720
  721 ITPIEEHEEV RRSKLVSRFR ARHWLFV