YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91086497
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEAFLDIA NQVVKLKMFP YFDIAHCTLC ALSVREDLGS GAQAFSRKHP LACWLSYMLV  60
   61 VFAGGMVANG LLAEPILAPL KNTPQLIVAT LVWYVIFYTP IDLGYKLAKF LPIKVVFSAM 120
  121 KEIYRCKKVY DGVTHAAKLY PNGYLIMVII GTLKGNGAGF TRLLERLMRG VWTPTAMEFM 180
  181 QPSFYTKASL VASIIFILDK KTELISAPHA LVYFGIVIFF VYFKLSSILL GIHDPFVPFE 240
  241 NLLCALFFGG IWDSLAKILG RGQLKEGESK DAKKTN

Type	Start	End	Confidence
Cytoplasmic	1	52	0.92
Transmembrane Helix	53	73	0.93
Non-Cytoplasmic	74	85	0.72
Transmembrane Helix	86	105	0.77
Cytoplasmic	106	209	0.61
Transmembrane Helix	210	230	0.88
Non-Cytoplasmic	231	236	0.71
Transmembrane Helix	237	256	0.82
Cytoplasmic	257	276	0.83