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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|91085609
Protein type: Globular with Signal Peptide
Type Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVNKTTKTK KKSTASTSST TASTSKVTKS TKTHGELSQA SSSSSLQISD ISHLPVDANI  60
   61 VTYTVTETLP TGGGEKITVY GETGATSTEY RHFIAQDSTA KQHSATITQL SSKLNRSTSN 120
  121 ISQESGSTYT VTEPVEELKL TYNKNDSGWN GKFVYEQPVT KKGQGTVVEH SSTSTSHEER 180
  181 SSIAKSSSSS YVIEIVDGKE RIIDQKHHES ASASSAVNDE HLAMKSGTNI TPEVHYKQGA 240
  241 KKSSTKYDTA IPELTQPKTK TSESVREVHQ VGDSVSTTAH SISDSTKGHK SIHHDSKSKT 300
  301 RDSLGKSTKG EEHKVTKSEV DFSHGSKTVR DESKRRESVD SNQTYTISDD KVGDLKKSSQ 360
  361 KHFTTYHDSK TERRESVDSN QTYTISDKSD KTSDLKKSSQ EQFTTYYDSK TVRDEVGSKR 420
  421 RESLDSNQTY TISGQTSDFR QSTRGEEHAK SSDFKSTRSG VEDFTSKSGD LRPKNGELTT 480
  481 TTTTTYYDSK GNVIKTVQDV NTDEIAGKRR DSVDSNRTYT LSEKSFAGDS TDEVSKRRTA 540
  541 QTTTDSRDFY GHGIDSSNTL VKTVYDDKAI QNTIGTKGRV IKDETIDSTD LVYSNERTYG 600
  601 KTGWNGKFTY ETPRKSEAKR SPSPQKRGTS PAKKRTPSPS TPKKGTSPDK TAPKRGTSPV 660
  661 KRKVTDTVQD FLSTEISENI NQCSTSDSKS TTDFQHMVPA PTDFKTFQTV SDSKTSFTSD 720
  721 SQSFVDVKNF VETSETVDIK NVDIRDTKVS NFVDKKATVE HVTSKDVKDF RTSKDVTDRV 780
  781 NKVHIEENIV DIKTIDEVEN ITNIERFSDN KVINIVKTIK ETPKPATVKI PNKEQCICEL 840
  841 CTCGRHTCPH NPEDYNDHLH LEGPFLGQPK DEYNATRGER APIIIPKDNL KPEGDFEKRQ 900
  901 PQKWQPGERA SVKIPEDHLK PEGEFEKRRP EEWKPGDRAP VKKPKDNLRP EGDFEKRKPE 960
  961 PWAPGERAPV RKPEDNLRPE GDFEKRKPEP WAPGDRAPVK KPQDNLKPEG DFEKRKPEPW1020
 1021 APGERAPVRK PEDNLRPEGD FEKRKPEPWA PGDRAPVKKP QDNLKPEGDF EKRKPEPWAP1080
 1081 GERAPVRKPE DNLRPEGDFE KRRPEEWRPG DRAPVKKPED NLKPEGDFEK RQPQKWSPGE1140
 1141 RPKPKKPTDN LKPEGEFEKR TPEKWAPGER EPVKKPKDNL KPEGDFEIPE PEQWKPAERS1200
 1201 TPTKPKDNLQ PEGDFERPEP KKYQPGERPV ARKPQDNLKP EGEFTGTRTI IEDYRVIRGE1260
 1261 RADIKRHEDN ITIGGEFIDE TTTKVDFNGE LVPRPSPIRR NTWTKIEGEF ITDTTNKSEF1320
 1321 IDYSTVVERT QIVKRRQDNL TVEGDMTFDT STTIDYTEKT PELEQRRRRT WTKDDVDKFY1380
 1381 STQNTETTTT TQEVYKQFDN QDVRQTIIVH RDNLRPEGPF EGTPKSKDDF VPKYVERPKP1440
 1441 KKPEDNLRPE GDFEKRTPEK FVPAERPKQK KPQDNLKPEG DFEKRTPEKF IPAERPKQKR1500
 1501 PEDNLRPEGD FERPTPTKVG PGERRTPIKH HDNLKPEGDF ERPEKPGYRP AERPQPKKPE1560
 1561 DNLRPEGDFE RPEKPGYRPA ERPKQKRPED NLRPEGDFER PEKPGYRPAE RPKQKKPEDN1620
 1621 LRPEGDFERP EKPGYRPAER PQPKKPEDNL RPEGDFERPE KPGYRPAERP KQKRPEDNLR1680
 1681 PEGDFERPEK PGYRPAERPQ PKKPEDNLRP EGDFERPEKP GYRPAERPKQ KKPEDNLRPE1740
 1741 GDFERPEKPG YRPAERPQQK RPEDNLRPEG DFERPEKPQY RPAERPKQKK PEDNLRPEGD1800
 1801 FERPTPTKVG PGERRTPIKH DDNLRPEGDF ERPEKPGYRP AERPTPKKPE DNLRPEGEFE1860
 1861 RPEKPGYRPA ERPKQKRPED NLRPEGDFER PTPTKVGLAE RRTPIKHDDN LRPEGDFERP1920
 1921 EKPEYRPAER PKQKRPEDNL RPEGDFERPE KPEFRPAERP KQKRPEDNLR PEGDFERPTP1980
 1981 TKVGPAERRT PIKHDDNLRP EGDFERPEKP GYRPAERPQP KRPEDNLRPE GEFERPEKPG2040
 2041 YRPAERPKPK KPEDNLRPEG DFERPTPTKV GPAERRTPIK HYDNLRPEGD FERPEKPEYR2100
 2101 PAERPKQKRP EDNLRPEGDF ERPERPEFRP AERPKQKKPE DNLRPEGDFE RPTPTKVEPA2160
 2161 ERRTPIKHDD NLRPEGDFER PEKPQYRPAE RPQPKKPEDN LHPEGDFERP TPTKVGPAER2220
 2221 RTPIKHGDNL RPEGDFERPE KPQYRPAERP QPKKPEDNLR PEGDFERPTP TKVGPAERRT2280
 2281 PIKHDDNLRP EGDFERPEKP EFRPAERPKP KKPEDNLRPE GDFERPTPTK VGPAERRTPI2340
 2341 KHGDNLRPEG DFERPEKPQY RPAERPQPKK PEDNLRPEGD FERPTPTKVG PAEKRTPIKH2400
 2401 DDNLRPEGDF ERPEKPQYRP AERPQPKKPE DNLRPEGDFE RPTPTKVGPA ERRTPIKHGD2460
 2461 NLRPEGDFER PEKPQYRPAE RPQPKKPEDN LRPEGDFERP TPTKVGPAER RTPIRHGDNL2520
 2521 RPEGDFERPE KPEFKPAERP KPKKPEDNLR PEGEFERPSP TKVGPAERRT PIKHGDNLRP2580
 2581 EGDFERPEKP QYRPAERPQP KKPEDNLRPE GDFERPTPTK VGPAERRTPI RHGDNLRPEG2640
 2641 DFERPEKPEF RPAERPKPKK PEDNLRPEGE FERPSPTKVG PAERRTPIKH DDNLRPEGDF2700
 2701 ERPEKPKFKP AERPQPKKPE DNLRPEGEFE RPELIEVGPF VDRVDVIKRQ DNLRVEGEWD2760
 2761 IRRRDDYSNT TVVDRVDVIK RQDNLRVEGE FTDVRTRDDY KVVKGERYDT VIHQDNLKTE2820
 2821 GEFRSSRTSD EYSVVKGERA EIITRQDNLR MEGEFNEYRK RDEFNTRIVE KAEVIRHQDN2880
 2881 LKLEGTFERP SHVHLGPGER RKPIKHEDNL HPEGDFERPD RPGFKPAERP SPIKPQDNLK2940
 2941 PEGKFELPTS PGFQPGERRT PIRHQDNLHP EGDFERPQRP QYQPIERPTP KKPKDNLKPE3000
 3001 GTFERPTASP VGPGERRSPI RHHDNLRPEG AFERPDKPGY KPGERPTPKK PQDNLRPEGE3060
 3061 FEKRTPAKPQ PGERRTPIRH QDNLHPEGAF ERPEKPKYSP GERLPMKKPQ DNLRPEGEFE3120
 3121 TPQKPKYGPG ERAPIVKHPD NLKPEGEFIG TPKSKDDFKP TRGERAPVKK PQDNLKITGE3180
 3181 FQDMTMQKSQ FVVTRGERAE IRKHEDSLTI GNGKTEYITT SKETFDKTTP TKVVTSPATP3240
 3241 GSINRRRHIE SHITLGSDTA VMQTTNQSNY NTYTKKIDRQ STTGRNEVAN KTTNVATDSK3300
 3301 TLADGTTVTT TRTTTKTTGQ QLAKQTQQVS AEVSTHHRKN VITSEEINNQ ILHRKGLHTS3360
 3361 TEALHATSSA ALDMRKSICN LHDQGHVSQN SERRSLSSIH RSTQESNASR RSHFATSYET3420
 3421 VERPQKIIRK DNLSVGGHFY GQSEARSYGE FTKQQNVQKI ERVTRRSNVS NISLGDSSST3480
 3481 IITSYKKEYL PRNVGPCPAV LIDLPKSPLK HTRDTKSHKY YAPVSTLAKP FEDEKSFSDD3540
 3541 NKLHCVDSND VGLNNERSNP NSFAEFYKPR SRFEGVEKFA NRPFDFDTKR SAEESPVNSL3600
 3601 EKRQVGVVYK DEMPIGILQP YQRSYRFIPI KEQSPANLDA SQAQDVPYSV PSFADIDKRE3660
 3661 VKELDETYPS ILTNFKIVNK LEKKRNYDDK NVRDLKATIR RLRSANPHNN EKIEEELKNI3720
 3721 LDDMGLIEDE ESHGVKREAS DDSLVEEELV AENERNKRDD NCNNNPNSKT TYDHNPASDN3780
 3781 NQRNELKTEN HPNVYKRESS DESERRKRQK SELVENLKDS GELMVSGNKS PLASSEITND3840
 3841 KRSSEEEEDY ESRIERNIQN KINSLKEEVK REIEALRKKQ DDEDDDEEDY QRKKRQVYDT3900
 3901 LMNEETDQVN PAMNPDNELK PLVRKRRQVD GGKRLERSSD ARPQEEAERE KSEEGGELLG3960
 3961 DFNEGAVAKR EVYSPDQEYD DGLYDRNKRD YDSFFSDYYY NNRAKRQNRF VPMRGNRWRR4020
 4021 FRRRINEDQG MGNRPQQLSD MSDLDLFGAL PKSYDGELSR YKRVKRK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle