YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91085009
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIQNGVCS SHTGVAEFYN GKTVFITGGT GFMGKVLLEK LLRACPGVAK IYLLIRPKKG  60
   61 QDAHERLKLL LCSPLFDPIR KSRPSDLHKV LPIEGDITQP ELAISSNDRL TLARTVNIVF 120
  121 HSAATIKFDE KLKLSVTINM LGTQRLVELC KRMTNLEALV HVSTAYCNCD RSEVKETIYP 180
  181 PPMGPDQVTS LVDCLDESLL DSLTSRLVGN RPNTYTFTKA LAECWLKENK GDLPLVIVRP 240
  241 SIVLCSFGGP LKGWVDNWNG PTGIIAAAGK GLFRTMLCDP EKIADLVPVD MVINLMLVAA 300
  301 WRIGTTKTKD MPIYNCSTGQ RRPITWKHFV GLCFKYMRKH PFSDVTWYPD GTVTASRTLN 360
  361 IINKYLLHWL PAYIMDGLVW MAGGKPIMVR IQDKLCKAAT CLEYFTMNEW HFDDENVRIL 420
  421 SQQLNEKDRE EFCFDVAKID WEQYVEDYVL GIRRFIFKEE SSSIPHARRQ VSRLYWLYRC 480
  481 LQVASVMCMW HFLTLRYAPL RQLWGNALRL LIHLARMLPF V

Type	Start	End	Confidence
Non-Cytoplasmic	1	365	0.82
Transmembrane Helix	366	384	0.44
Cytoplasmic	385	474	0.62
Transmembrane Helix	475	494	0.84
Non-Cytoplasmic	495	521	0.63