YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91084087
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.93
Transmembrane Helix	14	34	0.95
Cytoplasmic	35	52	0.90
Transmembrane Helix	53	73	0.94
Non-Cytoplasmic	74	82	0.80
Transmembrane Helix	83	107	0.89
Cytoplasmic	108	127	0.95
Transmembrane Helix	128	151	0.90
Non-Cytoplasmic	152	158	0.72
Transmembrane Helix	159	179	0.90
Cytoplasmic	180	189	0.70
Transmembrane Helix	190	211	0.88
Non-Cytoplasmic	212	240	0.93
Transmembrane Helix	241	259	0.87
Cytoplasmic	260	278	0.83
Transmembrane Helix	279	301	0.91
Non-Cytoplasmic	302	332	0.88
Transmembrane Helix	333	359	0.74
Cytoplasmic	360	383	0.89
Transmembrane Helix	384	403	0.96
Non-Cytoplasmic	404	411	0.72
Transmembrane Helix	412	433	0.92
Cytoplasmic	434	440	0.92
Transmembrane Helix	441	462	0.90
Non-Cytoplasmic	463	2265	0.99
Transmembrane Helix	2266	2289	0.90
Cytoplasmic	2290	2399	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTPTTVTFS WYDYLIFTGM LTVSVIIGIY FGCFGSKQST TSEYLMGGKK MHVFPIAMSL  60
   61 VASHISGVTL LGVPADVYKF GGAYWLSVFA LVIVSLVTIF VYLPVLYQAQ ITSVYEYLEK 120
  121 RFDQKTRVFS SFLFAVSQIL FLPVVIYIPA LAFAAATGIN LHLVTPVICA VCIFYTTIGG 180
  181 LKAVVWTDTL QFTVTLGAVT TVLVLGIKAT GGFGNVWQKA LDGKRLDFFD FELDVTRSDN 240
  241 FWAAFIGLTV LWISQCNTSQ SCVQKLLSVP TLSDAKLATI YYGVGMILVK TAAVLTGLVI 300
  301 YARYHTCDPF ETHQITRKDQ LLPFYVFDVA GNVPGLSGLF IAGVFSAGLS TLSAHLNCLS 360
  361 GTVYEDFVSK LLPKDITERT KSNILKLIVV VCGAICTLLV FVFERLGGIL PLVITFQGLT 420
  421 GGPLLGMFTL GILSRRATSK GALYGGIFGM VALASVVIPA KYLQTQGMIH IPAKPTSTIG 480
  481 CQFNFTENYS NQTIGDDGVL QVFKISYYYY TLLGFAFTTI FGIIVSFCTK KDGTAVSEKL 540
  541 LSPVVRRKGL EEDNYNTVEK ALHLVTQNSD KFYEMPMPLI PNIDLTGFGD DIIVTDYDFT 600
  601 NDNVAFTIDN TAFEVTTKHN NGSNSYTAVV KVKSYTYLSK DTQLTLTATD SGEPPRSSST 660
  661 TIQIKIDESN SLPDIPSVPE ASYQFDYAIG DDKKPELTPL GADIIVTASS DIAPDDYFTV 720
  721 ELDKNSQKVT IKPTDKVIEA SPNPVLVLTL VLTLNGKEKD SSKTAILVNL PTEKIITIPQ 780
  781 FGQAYYEAQY IVNDDKDTVE LSTDITVSEN AEVTLVDDEK HFSISKVGDK WQVTVLADLD 840
  841 SSDLKKGDIP LELQATVVVD KESYVGFATL IVNLPQVDLR FTKPYYTATY TVSEGDALDT 900
  901 LAVDGDIALT SPSGDVTVEL VDNQDYFTLS YIASSGTCTV EVKADLDQPT LHKGGDLIVN 960
  961 FKATLNGVEE LGALVITLPD VVDAKFVDSN YVANYVITTD GVTVNINGAP ISVKPPKPSS1020
 1021 QDITVSFKQV NDNFKIVKNV DQYLISVTTP LNASDLLTRE PKVFTLQTNT VPVATSTLVI1080
 1081 ELPDVRPKFT KTSYDATYKV DAAGSATVEL KDTIELITIL TPKLTFTGSF GDHFSFDPDK1140
 1141 DPQISVTTNL DEDVVKTNPE ILLTLQATIE GSSETETTII VLKLPNDGTT DTLQFEQPSY1200
 1201 VFSYKTGQDK PYIDNGGQSI SLVKVHTDAE ITITGTFSEN FELSGTDNQF SLGIKTPLNQ1260
 1261 TVLDTEPDIL LVLDASLAGL DDGFATILLH LPEKKSPNGP KFAQAFFTAN YELGADRHDK1320
 1321 VTIDGKAISL ADGTTEANIE PVGTNSEHFK IEKKSDGSGY ELSLVSNLDD SVLIGEADVV1380
 1381 LTLKATLGGD VGEGTLVVKL PKKTAPASFK QPNYVAKYNM DTDPHTIDMD GIELEGDYLD1440
 1441 DTVITLKVDD GLEDYFTIND KSPYKIALTK NLDDTVLNSQ HEVVVTVVAT LDKTSTTTSV1500
 1501 IVTIPDLPTP PNFKASVYYG KYDSDKKVVT LDDPIETDAK DSSIVHITAE KPYDTNFAVE1560
 1561 YDKTNGFAVK VTQPLDDETV QNNNEIFVVF DATVDRAVAH TSATLVLKMP TELNQIVPKF1620
 1621 SEAFYNAQLD EKTVTIKSPI TITSDKAGDT QVEVIDDYKE YFGAEFDGTS WQLTVVKELE1680
 1681 TALTEIVVTL EASLPGDDIK TTTTVIMALP DHGLTPSPKF TVPLYEAEYV DDEPPSLKIT1740
 1741 DPITLQAGFK DATVTVGSND YQQYFKLAQN KDNALQWDIS LSKPLTDDIL KNNAQLVVTL1800
 1801 KADLENSEGP EFATLVIKLP AQSQETVSFG ESYYTADYTV EKDKDKINSS EITVSEGATV1860
 1861 TVIKEYTDYF GVSCADKKCV LTVKKNLEDD VLNTKNEIIV VLQATKTDVA EKPTVPVIVS1920
 1921 LPLQDSIEAP KFEQIVYTAD YDKESSTISA NSIKFKDTET KGITVAIDPT SDYKNNFKVT1980
 1981 SKTDHWEVEV SQALDVSGKV SISFILQATK EGVQTMGEAV FVVNLPANED TSVVEFSRVT2040
 2041 YTGKYNVKDT TDEVVLEQNI QIKGISDTSK AKLIIEGGSN KDNFEIKASE EQKDQWIIGV2100
 2101 KTDLPNEILD TETSIVLTLQ ATVNETSSSG EVGVVINLPK AYTPTSFYFT STSYTADYEI2160
 2161 KNNSPELKVD SKISIENDPD STATTVKLSG DFAKYFAADY SKGIVTITLS KAIPNEIVEK2220
 2221 QSALPVTIEA AKKDNQVARA VLVVRLPKET SQNDDDDSSD DQTGLIAAVA VLAVLLVASL2280
 2281 VGSAVFYYFK FKTAKNYSNM SDSPRPSERF RKNSAGLDTK HKFEHATRRP TGVIKYPLKD2340
 2341 DESTDCVEEP ISEKRKSVQF DVIHIDELEI EPEKTDDEDN ENVYENVDSD SDHRRNSEA