YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91083823
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAPQSGLLL IQPQNNFHKS LRFLFVIAQV FGYFPVQGVS EEKVTGISFT WFSLRVLSSL  60
   61 LTAFLGIVVI FAQIRFMKLI TGYEQAQMNA IVFYGSGTLS SFLFIKLARD WHEIMTKWNQ 120
  121 LDKALISHGW PKGLDKTLKR IAIIFLALEA AEHFTIQANK LIVAVRCRGS FSKGFRYFAV 180
  181 DMSFAVVFDF VDYAHWLGMI FQLMNTRMAF AWTFLDLFII LVSCALSERF RQINDRIQHL 240
  241 TDIKLYGVFS LIALAATAEI PDYQEAKKPI IPILKQTFDQ DHGGYQFSYE TGNGIHAQES 300
  301 GYFKNKGDEK KEILVQQGTI TYHDEHGHPI TLSYIADENG FQPQGAHLPT PPPIPQEIQK 360
  361 ALQEIPQQDY AEDYQQ

Type	Start	End	Confidence
Cytoplasmic	1	50	0.51
Transmembrane Helix	51	74	0.86
Non-Cytoplasmic	75	87	0.41
Transmembrane Helix	88	108	0.77
Cytoplasmic	109	176	0.69
Transmembrane Helix	177	196	0.86
Non-Cytoplasmic	197	207	0.79
Transmembrane Helix	208	227	0.93
Cytoplasmic	228	376	0.68