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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|91083753
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLIYLRIA LLMHVISISE SRIRRKAKSV ESQNVEASGK ISQIQNQQPV ANYDDYSSEY  60
   61 DYVDEYDEHA TSTESRARIT TPQPPDERPI NEFTTERFSQ PNNERPTPSL LIPTGTVDIH 120
  121 ILHPTKPPTD SHVGAYSCRH NGKLYRDEEK WSVNFCTNCT CVRGTVECKT DEDCNKGIRP 180
  181 TREPQGFDIP GPRGEAGYPG EPGRPGESGA PGSPGTPGIP GLPGPPGPPP DLSAYYQQLA 240
  241 LSQGSQDKGP SFPVEPFQYL QAQVGPVGPR GPPGPSGLAG PQGFQGTRGE PGEAGPQGPP 300
  301 GPPGPRGLPG PPGKDGVPGE DGEAGQPGAS GPPGPRGLPG MPGLPGVKGH RGFPGLDGIK 360
  361 GEQGPPGEKG IPGNPGPVGP SGPVGPSGPR GERGREGPQG SPGLRGMDGI AGPPGLPGEM 420
  421 GKPGPPGFPG IPGAKGDHGS PGPKGSQGLQ GPRGESGRPG QPGETGLPGI PGKDGSPGEK 480
  481 GNPGAPGISG PPGFPGVRGL PGVNGSPGQP GAKGNTGSPG VPGYKGESGA KGETGAPGPR 540
  541 GLPGVPGSEG KRGKRGMRGP PGPGGPPGER GMPGARGLPG PDGAVGPKGQ TGDRGSAGPP 600
  601 GPKGSLGEPG RPGAVGPQGL RGLTGRPGPQ GRSGPPGERG MPGADGKPGE TGPQGLQGLP 660
  661 GPLGPPGDKG LQGEAGKDGE PGLPGPPGPR GDNGKDGAMG PQGAPGPPGV DGERGPPGVT 720
  721 GPRGFQGLPG TPGNQGMPGK DGEPGLQGPP GVPGNIGPRG ERGFPGERGP VGQPGIPGLK 780
  781 GNVGSPGPDG VQGPPGLPGA KGHSGAPGLV GLPGLRGQPG PQGEKGERGS IGPVGPEGPP 840
  841 GRQGLMGPPG PPGEPAERGE PGPPGLPGES GAPGAPGERG PVGSPGLQGF PGPQGLVGLP 900
  901 GLKGDRGIPG LKGMQGNPGH VGKPGEQGPP GPIGLTGAKG ARGEAGTRGD AGLMGPPGRP 960
  961 GDSGPPGHPG NAGPPGPAGL PGIKGATGDS GKMGLPGPQG LPGPPGLEGM KGETGAEGPV1020
 1021 GPSGPPGPAG LAGDRGLPGL PGPPGPPGMR GMRGAPGEVG TPGKPGSEGA QGPPGLTGPP1080
 1081 GPPGPTGEQG PEGPSGKPGM PGVAGRTGDK GPVGPVGPPG PSGPPGPPGE RGKPGVPGLE1140
 1141 GKKGDRGEPG PAGSKGHRGL IGLQGLPGSP GFPGEKGSPG NPGPPGKDGE AGSRGPPGRD1200
 1201 GSPGPQGVPG LVGPRGGNGN DGKAGPPGPP GPPGPPGPPG DGLGYDAASL AALLAQGQVN1260
 1261 NQKGPDPLGD EPARISGKSM SEQQRREFVI KAYEQLKTSF EKFKKPNGEK NNPGKTCKDI1320
 1321 SNAYPELKSG QYWVDPNEGD PKDAILVYCD MEQKSTCIVP KPEKSPEIYH QGKESEIWLG1380
 1381 EIKGGLKISY KAHSNQIGFL QLLSSHAQQN ITFNCKNTAA YYDVARHTYK KGIKLMAWND1440
 1441 VELTPRGNAR LRYEALVDEC RDCASSCWDS CGFCCVVPFC SCSSSSSCYS CVSCEGLLSA1500
 1501 GCSALNVRCS AFVYSDSSCF AMDYWRFFWT LFSFFLISKL SLDPSELERE RRFSLSLERE1560
 1561 RDLRSFDARG LDDERDLECD LLGDLEREAD FERERDTDFE RERELRCCCC LLLSNLAESS1620
 1621 LPLFSRSLGL ALPLFLKSSI LILDLERLLD LLSFPLSLFL LDLSTDRLLG RDLDRDLLLD1680
 1681 LDLSLSLYNI ISFPFHKFKN NLVFSLLAHF KEIISCSTRP KCTSDHSANL QFFESHKCQS1740
 1741 QDRMAISKNT VFAIYRYSKY LPSAAHINAE EQLYDEVNDQ IITVLISSVT TALGKIPTQC1800
 1801 QGSGGLKYLW GDALTDSPNC LGPNDTPYPT SAIERSFRSS NAWPGSSRQG RARKTIDPFI1860
 1861 TQKALLAAHE YSFDSASISR TARAANVSPA STCTGTPSRL CKTRYNTTAP MYGVSLTSGQ1920
 1921 PVTIVQKFPD LLQQVVFEVC ESSECDVVRG ECTQTYVPYL FLVIPLGPVT LTGQDYVLVE1980
 1981 SGCVCRPKYA SQNNQEAIVK GNFLIFWCFG SKTVIEPASA PALAKRFPEA PTTPTPIIVT2040
 2041 PRFTEPSTTA PIVITERFSE SSTTAPIVIT ERFSESSTTA TVASTASASK TAASAATPKI2100
 2101 APIAATSKIA PIATTSKIAP IAATSKIAPI AATSKTAPTT SSSETAATDK LSSLEALLQH2160
 2161 ALVLHRQNLL RFKLCKVVAI RPYFAVILAH KHRHIAERPG MLDVFPGAFR HQKQIICVLL2220
 2221 WRTLLRFALR IYKFDRFIAV QTNRVFFGHV LLHQIQLLEE FKLPFLISLA LPWYQPTSVS2280
 2281 LLFLLNFIRA LACLKSRKCV AASSTKRVVK YGIQSISFTL FEMLIAKVCA VFLIVISVNS2340
 2341 VSLDIKLYHD QNMAKFIATI KAIITRLVFA LHGFVAIWQV TIFKKNYFYW YLSSPILLLF2400
 2401 FEGIFTLTIK ENQEWKWFCP SVFLYLASIV PAIWLLELDK VDRRLRVKEE TFNLTSNTNL2460
 2461 KELNSLIGVQ IKLPEIPLST ETWITLIEQF LMLILIIGRW MLPKGDLTRD QLSQLLLVYI2520
 2521 GTAADIIEFF DSFKDDKIAS EPLLVLELDA VYCCFDGHKV KKIATYVDRS DSCCTIDVWG2580
 2581 IALNITLQDA PFLVFRLLLI THFQIISYMN VFFTCKNTLV ILLQLYRLYV VYSEHGKRRR2640
 2641 PKDDFELTNI SIISKPDMYG GRKKHKERTK PRKNRAKKVQ SEETEDSSEE SSEDRKKYSG2700
 2701 LKIKNCRKDT GYSTGSSHTS VRGHKKSKSR ENKKLKKLKR SDQETRGKRR LEEAFSEESE2760
 2761 SDLSPVEKKE EKRAKKTRSY EKEPTISLSM SPINTCHSIA ALFIAILAQK RPNGGEPNAK2820
 2821 SPISAVSSPA SSSSTEFSTN SFSSLKRLLT RAFLTGFLRG VPPFCPCPLL APPNLYSLTN2880
 2881 MTSSSLWSLQ LTFSPDVGEQ SSTVKASKTV PFRQRITAAI ALRPVDSELR EALNIPAIKI2940
 2941 PESPGYSPKT CITSRGIKAA MGTSVKAQEN MNSEYVRSVK DLLDTLMGRI FSPYKMIDFI3000
 3001 YFFTEDYKKE MKALQVIHSY TRNVIKSRQA AINSGEFEQK TKKNFLDLLL AANEQQMTLE3060
 3061 EIREEVDTFM FAARVYREQK DIFGDDFKRA VTFQDLKKMK YLEYVIKETL RLYPVGPFFS3120
 3121 RELDKDVPFA GKVLPKGLTI TLFIYAMHRN PEYFPDPEKF NPSRFETFDG KMPFAFVPFG3180
 3181 AGPRNCLGQK FAMLEMLSVV SRVVRTYKIL PSIPRHEINV AAQVVLISTN GMRMRFEKRI3240
 3241 LAWSQESNLD MASGLTSEMY LKKFLNARFC GTVRVLRSKV SVKISTGAKF GIMFEECFGD3300
 3301 GPFIFRLNES GTGPQLLTQV CLERGWREFN SDSGDQWNLW WRTSGFPVSH HRNLYAWQYI3360
 3361 NHIPKGSAIC RKDNLVRYLR CMRKVYGSIY DFSPHGYNLP LEYTKLAAEC SRGGRPFSSK3420
 3421 NDPPHDKLLE DKPIWICKPV AQSQGRGIFL FRKLSELSYD SNTIVQRYIE KPLLIGGYKF3480
 3481 DLRLYVCIPS YHPVTIYMYR EGLARFGTDK FSLNDLRNPF RHLTNSSINK LGPGYTEMKD3540
 3541 RIGSGCKWTL RQLRRYFQQA GISDWLLWQR IASLVILTVL SHVNQIPPTV NCFEFFGFDV3600
 3601 LIDSSLRPWL LEVNLSPALS NDCDADRSVK KPMLHDMFDL LGLPLYNTGL SVFDIFLDEP3660
 3661 NENNNEEKPK NVAFKSTLSV LNAAGRWRRK HRKMSAKQIS SRSSSAVRAK VRTVSATSPK3720
 3721 IVNLPKVNIH LPKTKPNYDL NKNDEEDLRK TGIAKKWGNG RDWNFATSSE GGWVRIWPMT3780
 3781 IEQPNKNCFL TVKQMVSKVI KFTKSAKELA KNHPTASECQ LNEFLQQEMD MSGEIWIPPI3840
 3841 MSVVKNHEGV VVPVTPINSS ALQAHEFQRV KEKAHSWLVA GKPVLGKEMD SVFFNDDRFE3900
 3901 LMVDTRGFRP EDVKCTVSPN GVEIVASRQE VQAGTQRSMS TTRTYQLPQF IQPQQAICCL3960
 3961 SREGILLVAL IICLLIVAIV ATLAQAGYIS YGGGGWRSGG GWRSGGGGWR GGYGGGRTVR4020
 4021 VIRVHGGGGY GGGYGGWRSG KYGCVHNFPV LIALLVLVAI LGLAQAGYLG SYYGGYGGYG4080
 4081 GGYGGYGGYR GWRGYGGYGG YGGYGGYGGG YGGYGGYRGY GGYGGYGGWR SERGVQGSNY4140
 4141 YYINSHVEGP KSVTFFGYNM KVFVCLLAVA AATNYAQAGY ISSGGFGGGG GGYGGGSSGW4200
 4201 ISSGGGGGGW KSSGGWIGSS GGGYGGGSSG WISSGGGGGW KSGGGGGYGG GGGFGGGSTV4260
 4261 KIIKIIVPSS GGGFGGGHGG GFGGGGGYGG GSGWKSGGGG FGGGGGYGGG SGWKSSGGWS4320
 4321 SGGGGGGWW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle