YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91083281
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	255	0.99
Transmembrane Helix	256	279	0.91
Cytoplasmic	280	312	0.97
Transmembrane Helix	313	335	0.83
Non-Cytoplasmic	336	357	0.90
Transmembrane Helix	358	380	0.88
Cytoplasmic	381	397	0.96
Transmembrane Helix	398	419	0.92
Non-Cytoplasmic	420	459	0.97
Transmembrane Helix	460	481	0.88
Cytoplasmic	482	487	0.83
Transmembrane Helix	488	506	0.93
Non-Cytoplasmic	507	534	0.88
Transmembrane Helix	535	553	0.94
Cytoplasmic	554	567	0.84
Transmembrane Helix	568	588	0.91
Non-Cytoplasmic	589	599	0.81
Transmembrane Helix	600	623	0.87
Cytoplasmic	624	639	0.83
Transmembrane Helix	640	662	0.78
Non-Cytoplasmic	663	680	0.88
Transmembrane Helix	681	702	0.88
Cytoplasmic	703	721	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKVLLFLVA GVLAAHAKFH WNRTSFPRVP VWNFTIEEKT LLNAEQTGKL CLKNVDKCME  60
   61 EDFNYETTAN RLADFVFGIV PPFDLSQVEG VAEDCKRQSE KYVEELLKFK LWALKMYDAS 120
  121 AKLPTGILNG NVNQLGDFDL CLQANERRLG IRGKYCLASM QVEAGAASPY ILALHRLAQS 180
  181 HHHFRSQLDD PGHRVPRFSS VNWALCVPSA CSSADVQLAL RTKINTISKN TDLAVRVLVE 240
  241 PDMCQSSQKE PLPTSTIIVS GIFAGIVLLV AVSTGYDCYA LGEKNRWMVA FSLRKNWTTL 300
  301 VTIKRSSDDI EAIHGIRFLN AFLLVLAHKS MAMFFTPYMN RTEMIEFVSR PWTVIGRAAS 360
  361 LYTDPFILIS GTLTAYSLLG KLKKNGRISV REEYISRLFR ILPTFAALIA FCTFVLPWMN 420
  421 QGPMWNQVVT HHSDLCKQYW WRNLLFIHNY FGFKDMCLTH THHVGIDTQL FFVSPLFALL 480
  481 LWKWPKRGVY VLAVLALAST AWRYYVTYTM KLSNYIHFGT SITQLFATAD NMYIIPLHRA 540
  541 TVYIMGVLLG YILRNYRNIS LSKSQLRFGN TVALLSFIAS LFGPAFMGSI DYVYNPTDAA 600
  601 WYAAFAPILW CFSFGWIIFT SHLGYKGLVE RFFSWPPFSL WTKISYTVYL TQFPVFFYNV 660
  661 GITRTTQHYG FFKILLNLQE LAWVWFLSVV LTLLIEMPFQ NIRNIVFKKE RTPEPLHKKI 720
  721 S