YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91082113
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWIWQKPSAD YSFSYGVKDL HTGDVKHQWE KKDGDIVRGH YSVLEPDGSV RIVDYTADGK  60
   61 NGFNAVVKHS GPAQHPISHK ENNLKPEFDQ NEVKHYVFVP QEEEEETEES IKVNQVQIPA 120
  121 KYYHKPTYDD FKTTRLPVDL NFVKQTTEKI VPIDVSQLYP IEIDLSQQAS PHELTQEELR 180
  181 KFLREYYNSG PENLNQPQLE HGFKPIKPIK PARQTYKSNK KPCCYIMFIK IVTIASLVAC 240
  241 SQAGLVPALS THSVALGPAL APALAPAPAL YGPSFLKAPV AAAPAYVKAA PSVDYVAYPK 300
  301 YEFKYGVADG HTGDQKTQTE VRDGDVVKGS YSLVEPDGTI RTVHYTADDH NGFNAVVSRA 360
  361 GHAVHPATPI AVAPKVLAAP AVAAPVYGHA VAAPVYGHAV AAPLGLGGYF KG

Type	Start	End	Confidence
Cytoplasmic	1	225	0.70
Transmembrane Helix	226	246	0.64
Non-Cytoplasmic	247	253	0.79
Transmembrane Helix	254	275	0.51
Cytoplasmic	276	385	0.57
Transmembrane Helix	386	400	0.33
Non-Cytoplasmic	401	412	0.55