YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91080745
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDKSAQKRH RKRKTWRIKH LKMLGDYEDE SSSSSGELTP TRKSGPGAAA QNSAQQNPSI  60
   61 LSSLRSVLIV ISSALICFAA ARNSITWHCQ RFWGASGDFW QAQWDKFLDT VGEDPFSLWV 120
  121 YGTTVLTFGV YWLFGGIYTI LDMTNKPAAL RRYKIQPGTN EPVDNKKLLH VIWCVIFNQI 180
  181 IVGLPSTILM YWIMSWRGFP PLRELPTFHW VLYELAVHIL VEEAAFYYSH RLLHHRSLYK 240
  241 IIHKQHHEWT APIAVTAIYS HPIEHLFSNL IPPFLGVFIM GSHVATAWLW FTLALLSTLN 300
  301 AHSGYHLPFF PSPEAHDFHH MKFNNCFGVL GVLDRLHGTD TNFRSSRAYV RHIMMLSFIP 360
  361 PREAYPDPNP CKHKLGKQ

Type	Start	End	Confidence
Cytoplasmic	1	65	0.96
Transmembrane Helix	66	85	0.92
Non-Cytoplasmic	86	117	0.94
Transmembrane Helix	118	141	0.87
Cytoplasmic	142	170	0.92
Transmembrane Helix	171	193	0.90
Non-Cytoplasmic	194	209	0.87
Transmembrane Helix	210	229	0.77
Cytoplasmic	230	248	0.72
Transmembrane Helix	249	263	0.59
Non-Cytoplasmic	264	273	0.52
Transmembrane Helix	274	296	0.79
Cytoplasmic	297	378	0.76