YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|91079232
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPHSRSLWL VLVLRAGLAS AQEAACYGSG SIALSVILSV VFTAVLLAAL LYLWGKYRKR  60
   61 KELILETDPE KGKGGEYAFD NPAFKDPGLT PIGKLEKEKV DANKTKWTQW SPLTALTTKS 120
  121 EKKKTLDDSA IDGNLVKVVA LRSHDFTGLG FNICGNMKEG IYIKDVLHRG PASESGKLNP 180
  181 GDRINSVTIS FEHMVYEDAL TILSYASPYE VIIEARGGKM FQTSGQGAQP SHPVYRSSSC 240
  241 TELFQVNSAK RKLFGTEEHS GSLSSNYSSL QKSRSNMTTL ERKESESPRN RPKKNPPKTQ 300
  301 MSPEQLKTQL EQRIMSDHQH NLKNKVEPKV EMEVQKTENK LQKFGIRVLP PEKSPKSAEL 360
  361 SQNENNLNLE KLPIGLDEVD DKKPQVKKRE RKLTPEIFDR DHVNNSSGIK RDANGIPQEI 420
  421 PNYMMNAAVA ARSNRKSSVK DEEDKTPKKT KGKAPSPPEF KNLDEIQPVD DFEEIAPKPT 480
  481 QDDLVEEIEV ELRNKTMKDY NSDSDLETDN HSSVNTIELN SSDITIHHAE DTEDRQNRRT 540
  541 ASTGDLTKIQ RTRKSSTGTL ERAQSLDITD TSIPTLTKKR KGRIEDDLMA SEEDIFGKVV 600
  601 MSKEPRLSLM LDGLNTFQRN RLKKSTEWGN LEDAILKLNQ EDESDPKTDL DLSGKTEEID 660
  661 AVVNKINEIK RESLEVQPPI KEETPPPKPE KKVKNQIWPF ETKANGSAIV DDNPRLASVE 720
  721 KRQRKPPILD PVKPAVPEKK DHLLAKKILH NVTVNNLRPQ SEENLHSLEI DTTEPELYTT 780
  781 ALDSTVKPEP ETPKVTISTP DIIKNVTIAE AINKLNNDVM VQGPSSLTLE ISNDAEIKDN 840
  841 RFMVDVKPDR VKKEDSGSET KSFEDDSSKS NSSLTYITEI QVLTPNNSTS TNISEIEIIP 900
  901 NVNSNSNGKT LDLEHEFEDY VRNFESNVKT FESNIQKFEN HLDSTPKPDL KSIIITENDA 960
  961 EKELHKIQEI AEEQLKKLPE MRFTTSSYEP SKLPEKRQSQ IELLRSNFEK SPPKSKPDTP1020
 1021 KSRIPIATTA KTPPTSPERR DSRNLDMEND KDILELMSST VHSTPKIKPP KNVTVTSIRS1080
 1081 NSKIPSGLPV LGGRPAVPPR RQEEDHVVQV STNGGVESSF KQWVFNPTDA VTNIVVAETT1140
 1141 TDHPVLVFWK SKFMASKLFG LLLLTALFAY SAATFGKEHV HIRIHVPEPA HHHDHHDHHD1200
 1201 HHHEEIVHHH HDDGGGFGGG FGGGFGGGGG GGGGGFGGGF GGGFGGGHDD HHGGGGFGGG1260
 1261 GFGGGHDDHH GGGGFGGGFG GGFGGGHDDH HGGGGFGGGG GFGGGHDDHH GGGGGFGGGF1320
 1321 GGGFGGGHDD HHGGGGYGGG GGGGFGGGFG GGHDDHHGGG GGYGGGGGGG FGGGFGGGHD1380
 1381 DHHGGGGYGG GGGGGFGGGF GGGHDDHHGG GGYGGGGGGG FGGGHDDHHG GGGGGFGGGF1440
 1441 GGGFGGGHDD HHGGGGFGGG GGYGGGGGHG GGGGGGGHHG GGGFGGGGGH HGGGGFGGGY1500
 1501 GGGHGGGGGF GGGFGGGHGG GGGHHGEITG VVGLIYAFHG VNWGVFETTD GKLLETSQDS1560
 1561 DKNRNNSEEN DVEDEGNVLE EFIDEEIVVK VGLVSVLILF LATLEHSLSS PGHHVHHRIH1620
 1621 VPTKIKTVYH TKIIKIPEHH HYFHEKEKPH LVKVPEHHHY FHEKEKEKPL DLHSYHPKDD1680
 1681 DLDLQNDWES DNKNYDFEEG HNIFKKHFVL VAVLLALAAA APAPGYHHHG HHEHVVIHVP1740
 1741 YHVHTVHHHH VKKVHVPVVK KIYVHEEPHY HHDHHHATFY GLRHGLAIFQ QLLTISFLFR1800
 1801 CVLSGFECKE SVDSTREVCK TELRCRFDED YDRIEKRFCR CKITIEHFPL PDNTLTFDLF1860
 1861 SGICFQRFNN LKQLWIQHAD LQYLDNNIFE KYPNLVHLDL SDNQVSLNFS KHAEKITTLN1920
 1921 ASYNKIDELK DEALADLKSL RVVDLSFNRL AQIGTGLKNL KSVEEVYMNN NQLTQIEEND1980
 1981 FEPLQKLRIL NLAHNFQVSI KSPLFFLHLQ ELYLNNNRLK SINAQEFVRL PSLRILKIGN2040
 2041 NLFETISDNH LFEQLEEFHG ENNQIKALNG HILNKLENLK MVNLSNNALK NIEGDTFATS2100
 2101 NRIKVVDLSS NKLAKIDPRN FRNMNNVSFL NLHNNSLTQE VISCDNLQNL MQLNVLDLSY2160
 2161 NEISEIYTCT FRKLEKLQKL SLLANHLKTI PPSAFQTLHN LQELNLAHNQ LTEIPENSFQ2220
 2221 EDIIICPYDK NHVLLWFRLE RHIWKCHRAD KEKQRASSKV MVQEEEEENW DHFNEPSYLD2280
 2281 FLRSKRKHVI KQRASSKVMV QEEEENWDHF NEPSYLDFLR INGLSHQGVR VGFRLRKGSL2340
 2341 GGLTEEFLHR RHLRLSVQLV VANKPRGVEC LTEKFVLEKD IIICPYDKNH VLLWFRLERH2400
 2401 IWKCHRADKE KQRASSKVMV QEEEEENWDH FNEPSYLDFL RSKRKHVIKQ RASSKVMVQE2460
 2461 EEENWDHFNE PSYLDFLRKT SVNQQRLPPH HPIIRGLAKM KCWALLVTLG CLFVAPIESI2520
 2521 PAGLSRVKRS HHEPEGYWSK KLTWKTEWVK VWKTEKKLIW KPEWKKSQIP AWKEIQVPIW2580
 2581 KEIQVPDWKT ITKPIWKETQ VPAWKEIQVP DWKIVQVPAW KEIQVPDWKE IQVPDWKEIK2640
 2641 VPDWKEIQVP DWKEIQVPDW KEIQVPDKKQ IWIPVWKEIQ VPAWKEIQVP DWKKIWVPEW2700
 2701 VKEGIPGEHY LGKDHHGAEY TAHDLWKKKL IWKPVWKKIW RTEKKQIWIP QKKLEWKPEW2760
 2761 KTIWRTEKKQ IWRTEKKQIW RTEKIQIWRT EKKQIWRTEK KQIWRTEKKQ IWIPKKEQIW2820
 2821 RTEKKQIWIP KKELIWKHEK VQIWRTEKKQ EWVTEKKQIW KDVWKKIWVP VWKTYEVPAW2880
 2881 KKISKPVWEK VWVKIALWVI LQISWTSSKP VETATKPQDQ QAVESQQLQK RVGYDSFSPH2940
 2941 HSEEHVYHDH HEEHHPEEHH DFHHEDHHDI HHEEHHDDHH EIHHDHHDHH DHHDPGYWKK3000
 3001 KVIWKKGWKK IWKPGKKQIW KPSWKKIWKP IWVPTKKPAW KEIQVPDWKK IWKPVWKEIK3060
 3061 VPAWKEIQVP DWKKIWKPVW KPIKVPAWKE IQVPDWKKIW KPVWKEIQVP AWKEIQVPAW3120
 3121 KKLWYPVWVK EGIHGEHYLG KDHHGNEYTA HDIWKKKMIW KPVWKKYWKP AKKQIWIPDK3180
 3181 KLEWKEAWKQ IWRTEKKQIW VEDKKLVWKE AWKQIWRTEK KQIWVPDKKL EWKEAWKQIW3240
 3241 RTEKKQIWVE DKKLAWKEAW KQIWVPAWKE IWVPGWKMIW RPVIIKEWFP SPDHHDHHHH3300
 3301 HGWDRSDAKT SESQTAPLVT VPSTQVPNQS QVQGKNWSFP SSTVHRGGGV QVGGGLGKGI3360
 3361 HSLTSTGPQT FLHTGIQICK TYSQKFAPTN RSVHLKLCFC GLKAGNYFAK IMADAFAFNA3420
 3421 RQYFDFTQEH DELNSDSFFD ENVEENGPLG QNLEENFQCN GEVFEREVSD PESDYFFSPM3480
 3481 EDTKTNSSTI YLKSRMRKSL SMNDLRLKKV PNQNGLDRAM DELCLNNHQP AEPRPSSACS3540
 3541 LNSRKTISKE HINRLAQPKR YTSHDNLARQ SSMTLAEAVN KFQAGTPKRF RSKPLNNKAP3600
 3601 LGPTIPKTPK FLTNARVRPV TALSKEEQEE RELEEARKAK EARLEAQKRE IEERLRRQEE3660
 3661 EEKLKLRKQA ELKAQPIKKY KEVTIKPANK ITNPVSPKFS SRVRNKENIE E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle