YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|219670945, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGTIVNSLA IIGGALVGIL FGKALPEKIK KTVIQGIGLA VILIGLRMAL TTNNPLVVIG  60
   61 SLVLGGIIGE WIDIEDKLQQ LGKWLESKFA KGGNGNFTKG FVSSSLMFCV GAMAIMGALE 120
  121 SGLKGVHDTL YAKSMLDGIT SIVLASSMGI GVLVSAVPVF LYQGGITISA ALLQGFLSDP 180
  181 VIAEMSATGG LLIVGIGLNI LEIKEIKVGN LLPAIFVAVP ITMLLAQMA

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.87
Transmembrane Helix	5	25	0.87
Cytoplasmic	26	32	0.84
Transmembrane Helix	33	51	0.80
Non-Cytoplasmic	52	99	0.76
Transmembrane Helix	100	119	0.90
Cytoplasmic	120	138	0.74
Transmembrane Helix	139	162	0.89
Non-Cytoplasmic	163	180	0.80
Transmembrane Helix	181	201	0.92
Cytoplasmic	202	207	0.85
Transmembrane Helix	208	227	0.92
Non-Cytoplasmic	228	229	0.75