YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89897649, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.92
Transmembrane Helix	21	42	0.94
Cytoplasmic	43	49	0.85
Transmembrane Helix	50	71	0.91
Non-Cytoplasmic	72	90	0.95
Transmembrane Helix	91	112	0.96
Cytoplasmic	113	156	0.96
Transmembrane Helix	157	178	0.88
Non-Cytoplasmic	179	192	0.82
Transmembrane Helix	193	214	0.94
Cytoplasmic	215	237	0.86
Transmembrane Helix	238	259	0.94
Non-Cytoplasmic	260	277	0.87
Transmembrane Helix	278	298	0.94
Cytoplasmic	299	304	0.91
Transmembrane Helix	305	327	0.90
Non-Cytoplasmic	328	348	0.92
Transmembrane Helix	349	368	0.96
Cytoplasmic	369	400	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITYLANVE HPVQLGYLIS IYFFYTGLSA GSFVLSSLGT VFGIQKYKPI AKAGVVMAIA  60
   61 LLAVAPLHLI ADLEQPARFY TLFFRLNPTS AISYGTFLLT LYPLTCIFYL WFMMRKDFAL 120
  121 GAQKLTGFRQ ALYSFLTFGK KDLSPDALAK DQKWIKGLGT LGVPLALSVH GYTGFILANM 180
  181 QARALWHTGL MPLIFLMSAM VSGTGLLILI LILTQRYFSP ERALTPRRKA VLQDIARLMM 240
  241 WFIVVDGVLM AINFIILYFG NAAGYAAAEM LLRGSHSTMF LGVEIGLGLV IPFVITFWSK 300
  301 TRKSLGLISL ASLLTLLGVI AMRINFVVGG QQIPLSGNAL NPYHVEPRHL MFLCCFAVLE 360
  361 VVILYLAFKF LPVYGIEPEK ERTSVEHHLP PSSGVSVRSN