YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89897368, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWSLRKSLI LKLWLTIVGL ILGVFLFSVL IQAQQIRTLI YNQQAKFYIY EAEEVATIYN  60
   61 TYKDTDPTLI NERFQILASF LNADIVIANL EGEHLSGQPI SPHLKQILQE PGFKGKIASG 120
  121 NNVVYSGKFP GGEIEMFLVA VPLRIQEQVI GTVVICTPLS LIKKHVQSLL WIAFVGALLG 180
  181 IVLATILSML ISRKLIRPLV KMEETAKNIA EGDFGRQIEV ASEDEVGRLA HSFNVMSAEL 240
  241 KAKIEAIERY DRLRQELLSD VSHELRTPLT VIQGFSEAVL DGLVKSKEQE QNYLKLIIDE 300
  301 TERLRRLVDD LLDLKALEEV ETFDEMDYVV LNKLVQISVE RFKQLAETRE IELEIILPEA 360
  361 PVTIWGNSDR LKQVLTNLVD NAIKHSESGT KVGIQLEFEN DWAFIAVKDS GPGIPQGELE 420
  421 NIWERFYKID KSRSRRGTGT GLGLSIVKKI IEMHNGKVLA RSRIGQGTVF TVYLPLILSD 480
  481 EIKE

Type	Start	End	Confidence
Cytoplasmic	1	9	0.66
Transmembrane Helix	10	31	0.69
Non-Cytoplasmic	32	168	0.90
Transmembrane Helix	169	191	0.94
Cytoplasmic	192	484	0.84