YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89336117, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	43	0.90
Non-Cytoplasmic	44	60	0.92
Transmembrane Helix	61	83	0.89
Cytoplasmic	84	90	0.94
Transmembrane Helix	91	112	0.93
Non-Cytoplasmic	113	119	0.67
Transmembrane Helix	120	138	0.96
Cytoplasmic	139	148	0.82
Transmembrane Helix	149	171	0.91
Non-Cytoplasmic	172	176	0.78
Transmembrane Helix	177	195	0.95
Cytoplasmic	196	272	0.97
Transmembrane Helix	273	293	0.91
Non-Cytoplasmic	294	307	0.78
Transmembrane Helix	308	329	0.90
Cytoplasmic	330	336	0.83
Transmembrane Helix	337	354	0.93
Non-Cytoplasmic	355	360	0.69
Transmembrane Helix	361	382	0.90
Cytoplasmic	383	394	0.84
Transmembrane Helix	395	418	0.83
Non-Cytoplasmic	419	425	0.78
Transmembrane Helix	426	445	0.95
Cytoplasmic	446	457	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRRIKMSIS QRIEKLPVKR FHYILLISAG LGWMFDSMDT GIISFVLPVL MKTWGLTPEQ  60
   61 VGNIGSVGLL GMALGAILSG SVADRIGRKK VFAFTLVVYS LATGLCGLAW SYASLLFFRF 120
  121 LVGFGLGGQL PVAVTLVSEF TPAKHRGKFL VLLESFWAIG WLLASVISYL IIPNYGWHIA 180
  181 FFIGAIPALY VFYLWKYIPE SPRFLEEQGR IQEAEAVYRL IAGEAGPDVK AGRTAEEAKR 240
  241 EHRQPQKGTA KTKVLKRVTV AELFSRKFLR RTVFLWLLWF GIVYSYYGIF TWLPSILALK 300
  301 GFSLTKSFSY VIIMTLAQIP GYFSAAFLVD RIGRKPTLAA FVLGTAISAY FFGLGNSVAM 360
  361 ILVFGSLMSF FNLGAWGILY TYTPELYPTR ARGTGAGWAA GFGRIGGILA PMVVGRMLGA 420
  421 EMPTETVFLM FAGVLILVVF NVLILGEETK GRPMDEL