YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83633501, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSEVSSWL GFADDSMHWI VRVFLIVFVT LLTNYLCHKV IGRIERQLAK TRNLWDDTLL  60
   61 DAGAKPFGVF IWLIGLSWAA EVAQRETGAV VFEAVDFIRA IGVIVLIIWF LIRFVKGAEE 120
  121 ILVSPDKMKQ PMDKTTMSAI SKLLRASIII TGVLVIMQTL GYSVSGVLAF GGIGGIAVGF 180
  181 AAKDLLANFF GGLMIYLDRP FSVGDWIRSP DKNIEGTVEQ IGWRLTCIRT FDKRPLYVPN 240
  241 STFTTISVEN PSRMTHRRIY ETIGVRYDDF SQVPAIVEQV KTMLAEHEEI DETQTMIVNF 300
  301 NAFASSSLDF FIYTFTKTTN WIKYHEVKQD VLIKVMDIIQ RNGAEVAFPT QTVHLPDQLK 360
  361 VLKEAESLQD RRE

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.98
Transmembrane Helix	18	38	0.94
Cytoplasmic	39	57	0.91
Transmembrane Helix	58	80	0.86
Non-Cytoplasmic	81	94	0.82
Transmembrane Helix	95	115	0.88
Cytoplasmic	116	142	0.88
Transmembrane Helix	143	162	0.86
Non-Cytoplasmic	163	166	0.61
Transmembrane Helix	167	187	0.81
Cytoplasmic	188	373	0.92