YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKAGGLAA IMSGQPVVVV KKRSVFWRLR HLTRQGGLHV GLILLCILYV HFGALFFMYS  60
   61 ESPEEKYFLE NLLKLTFVSD SHEKSQRILR RVEKRYDILR ETFLENVNRV KLEDFSDERR 120
  121 VNESISRLID DYSKHMFKLF TNPVAANMFD CLFYSQSNYT PLWTTDSSLL FTATTIIPVG 180
  181 YGYIAPLTST GRIVLCIYAA FGIPLALVMM SDVGKFFADA FVKFFHEVRR IVQRLKMSLK 240
  241 IQNITAFMVV LLILLVAYSV IGGIAYSKIV GVPMIEGVYF STITIFTIGF GDITPGIPVY 300
  301 VIIIFIVFGV AIVTIAIDVV AANIIHHIHY MGRQVGRAKI IADKMLSVSL E

Type	Start	End	Confidence
Cytoplasmic	1	35	0.86
Transmembrane Helix	36	58	0.88
Non-Cytoplasmic	59	161	0.91
Transmembrane Helix	162	185	0.78
Cytoplasmic	186	193	0.65
Transmembrane Helix	194	214	0.87
Non-Cytoplasmic	215	243	0.76
Transmembrane Helix	244	266	0.88
Cytoplasmic	267	271	0.60
Transmembrane Helix	272	293	0.78
Non-Cytoplasmic	294	300	0.57
Transmembrane Helix	301	325	0.88
Cytoplasmic	326	351	0.84