YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89892352
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.56
Transmembrane Helix	36	56	0.91
Cytoplasmic	57	65	0.47
Transmembrane Helix	66	100	0.64
Non-Cytoplasmic	101	119	0.63
Transmembrane Helix	120	142	0.89
Cytoplasmic	143	153	0.55
Transmembrane Helix	154	172	0.74
Non-Cytoplasmic	173	195	0.86
Transmembrane Helix	196	216	0.94
Cytoplasmic	217	229	0.88
Transmembrane Helix	230	251	0.85
Non-Cytoplasmic	252	288	0.87
Transmembrane Helix	289	310	0.91
Cytoplasmic	311	330	0.84
Transmembrane Helix	331	352	0.90
Non-Cytoplasmic	353	467	0.74
Transmembrane Helix	468	492	0.58
Cytoplasmic	493	538	0.48
Transmembrane Helix	539	553	0.57
Non-Cytoplasmic	554	554	0.11
Transmembrane Helix	555	575	0.79
Cytoplasmic	576	672	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLRTPFKG VVADIEGRVA WYKHDWVAGF RSGFRILAPT MYIFFASALP VIAFGAQLSR  60
   61 ETNGILTTVE TLASTALCGI IHSILGGQPL LIVGVAEPTI IMYTYLYNFA KNQQALGERL 120
  121 YLAWAGWVCI WTALMLFLLA MFNASNVISR FTRVAGELFG MLITVLFLQQ AIKGIIEEFK 180
  181 VPRDADHSSP IYQFQWLYVN GLLGVIFSIG LLYTALRSRR ARSWVYGQGW LRGFIADYGV 240
  241 PLMVIVWTAF SYTLPKDVPS GVPRRLFSPL PWESSSLQHW TVAKDLFSVP PAYIFAAILP 300
  301 ALMVAGLYFF DHSVASQLAQ QKEFNLKKPS AYHYDILVLG FMVLLCGLIG IPPSNGVLPQ 360
  361 SPMHTRSLAV LKGQLLRKKM VQTANEGLMN RASSLEIYGK IQGVFIEMDC EKNTDSVDKE 420
  421 LKSLKDAILQ EVDKEGTLAE EFDPIKHIEA HLPVRVNEQR LSNLLQSLLV GACVGAMPVI 480
  481 KMIPTSVLWG YFAYMAIDSL PGNQFWERLR LIFIPSSRRY KVLEGPHASF MESVPSKTIT 540
  541 VFTIFQLVYL LICFGITWIP IAGILFPLPF FLMILIRQHV LPKFFEPNDL RELDAAEYEE 600
  601 LEGVHHDHTL EDGESDSGSC GSRDDAEIFD ELTTNRGELK HRTSSHREER HLQVHSNAIQ 660
  661 PRCGDTENLS EC