YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89941458, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKLEQDQE ATTVLYSNLS TQNISTTDKS LCYSLQCYMV LTTQEQKAIS SICFLAGPVT  60
   61 FLANILVLLT IASSTALRRR PSYLFISSLA LADMFASCFF TISFLDFHLL SQRDDANLYL 120
  121 FKLGGVTMAF TGSVGSLLLT ALDRYLCIYQ ASNYKLLLTR TRAKLAILLL WCVTIIISFL 180
  181 PLMGWRCKTW LDRPCSRLFP YVDHHYLASW TGLQLVMLFL IMVAYALILW KANRHEANMG 240
  241 GPKLGRQSVK GQARMRMDIQ LAHTFSLILL ILAICWLPVL SFMVVDVRVT LTNKQQRMFA 300
  301 FCSTLCLVNS CVNPLLYALR CRELRGEMLA LIECCKACRE HALGHTHGQI TDSSSGKKST 360
  361 NPAVSGSNPE IVSGSADRQQ NSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.93
Transmembrane Helix	48	72	0.82
Cytoplasmic	73	82	0.85
Transmembrane Helix	83	105	0.91
Non-Cytoplasmic	106	122	0.82
Transmembrane Helix	123	142	0.91
Cytoplasmic	143	164	0.82
Transmembrane Helix	165	185	0.91
Non-Cytoplasmic	186	206	0.95
Transmembrane Helix	207	229	0.92
Cytoplasmic	230	260	0.95
Transmembrane Helix	261	282	0.91
Non-Cytoplasmic	283	297	0.85
Transmembrane Helix	298	319	0.87
Cytoplasmic	320	383	0.92