YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89474873
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIVIRSLL RGLLHSRNFG SVAGVPGGAR MQLTFAAVAS PGTRHQSLSD GGFQWRRFLT  60
   61 SSKAVAEEQG KVKLEQGVKD IENNQEKEKE KDNALVSSYW GIYRPKITRE DGSEWPWNCF 120
  121 MPWETYRADL SIDLGKHHQP KTFLDKVAYR VVKLLRIPTD IFFQRRYGCR AVMLETVAAV 180
  181 PGMVGGMLLH LKSLRKFQHS GGWIKALLEE AENERMHLMT MIELVQPKWY ERLLVITVQG 240
  241 VFFNAFFVLY LMSPKLAHRI VGYLEEEAIH SYTEYLKDIN EGKIENVPAP AIAIDYWRLP 300
  301 KDARLKDVIT VIRADEAHHR DVNHFASDIH FQGKELRESA APLGYH

Type	Start	End	Confidence
Cytoplasmic	1	170	0.62
Transmembrane Helix	171	191	0.71
Non-Cytoplasmic	192	232	0.78
Transmembrane Helix	233	252	0.75
Cytoplasmic	253	346	0.67