YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89276325
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPKCFSCA MAIPRFVSSI AFMVIGLAIF VIVASVLLVS SPIFSSFQDY FLSVDHARES  60
   61 QPPILSSFAD NRPEMFVSEP RSPKGEPTDL IFKDDSTKEP VSGSDAVNYD VNSTASDANL 120
  121 CDLYHGKWVY DPRGPLYTNI SCPLITQMQN CQGNGRPDKD YESWRWKPDQ CDLPRFDARK 180
  181 FLELMRGKTL AFVGDSVSRN QMESLLCILC HVDMPKNRGN RRMHRWYFKS TSTTIVRIGS 240
  241 SWLVHKTSEP MAFAPEGVAK VHLDLPDEYF MEFLPEFDVV VLSSGHWFAK PSVYVLNGTI 300
  301 VGVQLWKPPQ NALVDTRITN IEAFEMSVET AVEAIAAHPN FTGVAIFRSY SPDHYEGGAW 360
  361 NAGGSCTGKV SPVGELVRNE YTEVMHEKQV SGFGRAVEKA GKKSNLVFMD ITEAFGYRPD 420
  421 GHPGPYRSPD PNKKTKRGPH GEPPPQDCLH WCMPGPIDTW NELLPEIISK RF

Type	Start	End	Confidence
Cytoplasmic	1	15	0.94
Transmembrane Helix	16	39	0.87
Non-Cytoplasmic	40	472	0.99