YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMS2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIIETAKLE GHLESQTNNS TNTYTSPTEA VEEEDKNGKG KPKTLSNGLR KGAKKYPDYI  60
   61 QISMPNDSRN KLPLEWWKTG IAFVYALFNL ILTTVMITVV HERVPPKELS PPLPDKFFDY 120
  121 VDRVKWAFSV SEINGMVLVG LWLTQWLFLR YKSIVGRRFF FIMGTLYLYR CITMYVTTLP 180
  181 VPGMHFQCAP KLNGDSQAKI QRILRLLSGG GLSITGSHIL CGDFLFSGHT VVLTLTYLFI 240
  241 KEYSPRHFWW YHLVCWLLSA AGIICILVAH EHYTVDVIIA YYITTRLFWW YHSMANEKNL 300
  301 KVSSQTNFLS RAWWFPIFYF FEKNVQGSIP CCFSWPLSWP PGCFKSSCKK YSRVQKIGED 360
  361 NEKST

Type	Start	End	Confidence
Cytoplasmic	1	78	0.98
Transmembrane Helix	79	100	0.90
Non-Cytoplasmic	101	126	0.92
Transmembrane Helix	127	149	0.88
Cytoplasmic	150	158	0.85
Transmembrane Helix	159	179	0.85
Non-Cytoplasmic	180	215	0.91
Transmembrane Helix	216	240	0.86
Cytoplasmic	241	247	0.95
Transmembrane Helix	248	270	0.93
Non-Cytoplasmic	271	276	0.74
Transmembrane Helix	277	293	0.70
Cytoplasmic	294	365	0.72