YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89257605
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQKSQAEK RMNSFFSPSR PGPKPWPNRK KQTNKSAICL CSVSLLAVLF LSVFFITYSE  60
   61 IPKSIFSISS AFSGSVEFPQ CRSETLSRTL IGQRFLLYAP HSGFSNQLSE FKNAVLMAMI 120
  121 LNRTLVVPPV LDHHAVALGS CPKFRVLSPS EVRVSVWNHS VELLRSGRYV SMGDVVDISS 180
  181 LVSSSAVRVI DFRYFASLLC GVDLETLCSG ELAEQSQAYE SLRQCGYLLS GVRGNVDGCL 240
  241 YGVDDDCRTT VWTYRNGGSD GRLDSFQADE KLKKKKKITY VRRRRDVYKA LGRGSEAESA 300
  301 AILAFGSLFT APYKGSELYI DIKKSSSVPE VKSLIEKVEF LPFVREVMSA GKRFATGTIK 360
  361 APFLCAQLRL LDGQFKNHQE STFTGLNQKL ESLSLKNPGL VHVFVMTDLP ESNWTGTYLG 420
  421 DLAMNSTKFK LHFLREEDEV IVRTEKELAS AAHGQKFGSI PMSLDSIKKM QKHCSPRKVS 480
  481 NVQLYVEEAV CSCASLGFVG TAGSTIADSV EMMRKFNACS S

Type	Start	End	Confidence
Cytoplasmic	1	36	0.56
Transmembrane Helix	37	58	0.54
Non-Cytoplasmic	59	521	0.99