YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-22
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSAIDKLI RPFLQLHEWD NGAERIVHTT TIQILICFGF LVSSNMMFGQ PITCLMLPET  60
   61 PDSSANYFHD FCFYQDKLRI PPLHNAVKRS TRQGTMNINN IMPQEVAVTY YQWTPFIIFL 120
  121 QVAMCLVPAL MWKFFGLHYF YGHDFAAIVR SLASKKKDDK MDSSNSNYEV DARETLRWLE 180
  181 HKKRERFGMH TTMMIYVAMK WMTFASLLFQ FNLMAKIYAS GELLWGVHIS YELLNGAYKN 240
  241 VYTGVFPQIV GCNPHRAQLG GVVNEFIMRC ILPQNFVNSK VFLFLYWWYI LAMLVSIYSA 300
  301 VQFTAMLFLP KYQRYATKSL LPTEEFFNEH AEKPTKGSLE FFVDYMGNDG YLLLQCASVP 360
  361 LSVVRIRFFL NSLYTIVVEK KKEYEDQKPM VPRKQKTPID HIQFDGPDRS GTKGPYKNGK 420
  421 AMIMSDGDSY TKQLLSHSSP SCSPASSQRY SAAPGKNLED YE

Type	Start	End	Confidence
Cytoplasmic	1	28	0.90
Transmembrane Helix	29	49	0.82
Non-Cytoplasmic	50	115	0.89
Transmembrane Helix	116	136	0.88
Cytoplasmic	137	186	0.94
Transmembrane Helix	187	211	0.75
Non-Cytoplasmic	212	284	0.89
Transmembrane Helix	285	309	0.88
Cytoplasmic	310	462	0.92