YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39976
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.18
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRHWKEFEC EKWESCNDNS HVKRKHVNTC YFNPPPSNRK LKYCSLFGDP HLIMFNGSVQ  60
   61 TCSEEGARPL VDNRYFLVQV TNRNVRGEAL TTTVTKVTVL VRKHNCTASL RYEASSDEEG 120
  121 LPRGFVDGTT FQMTSKHSVE VLWQDDNYVE IALHFIHSSI HIRRQGPYLS VSVRAPTIVL 180
  181 ETGGDVAREL CWSGCRKSSR IPAELAVEMT KKFAECYRRR VHVPKKVAEE TTFLSEQKVL 240
  241 PIYDRCKDIG NIGVFFDACV FDLMFTGDDY LVHLSRAAES DFRRLAPHHF QSHVTQQHAR 300
  301 FQKENQHKNH INQSEIFKKC IPSKSIRFYP FLAIFFFALL SLLC

Type	Start	End	Confidence
Non-Cytoplasmic	1	325	0.55
Transmembrane Helix	326	343	0.60
Cytoplasmic	344	344	0.18