YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPK3A_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLWALLAL GCLRCGWTVN LQPQLASVTF ATNNPTLTTV ALEKPLCMFD SSEPLSGSYE  60
   61 VYLYAMVDSA MSRNVSVQDS AGVPLSTTFR QTQGGRSGPY KAAAFDLTPC GDLPSLDAVG 120
  121 DVTQASEILN AYLVRVGNNG TCFWDPNFQG LCNPPLTAAT EYRFKYVLVN MSTGLVQDQT 180
  181 LWSDPIWTNR PIPYSAIDTW PGRRSGGMIV ITSILGSLPF FLLVGFAGAI ILSFVDMGSS 240
  241 DGEMTHDSQI TQEAVPKTLG TSEPSYSSVN RGPPLDRAEV FSSKLQD

Type	Start	End	Confidence
Signal Peptide	1	21	0.85
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	208	0.92
Transmembrane Helix	209	235	0.77
Cytoplasmic	236	287	0.84