YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95007198\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSPAPQQHW NEPLARVMDV VLNCTIRFKT AAEVGKRAVF YCRGEDLFAW MMNNREMLQK  60
   61 KHADALDGQS LASETDVIEF CDKLIRFGFM YRAQYKPIDG VIEQDEEGRF KRPKWPKRLA 120
  121 MTPKQNFDPQ AFYVVVYEGS KSWQHFILFC IIAAVLCVCM FPAWPLKLKV AVWYLSVVLL 180
  181 TLILVLVFVR LVLFVFFWFF GYQFWLLPNL FNEDAGIIDS FLPWIEWHRS QDDWAMFAAR 240
  241 IFCAILTAGT LYKLSETHTP ASVANFAKQS FLDVLDWGHQ RLAAPPGGYS KYASITDKQE 300
  301 GGQGTEEEGE TNEENAEGKA DEDEYSCLKQ CGFASFEHLM QARCLVKCSC VGDLLESKCF 360
  361 AKCPEATQAA LREAARDACE EEEKRKRRRH

Type	Start	End	Confidence
Non-Cytoplasmic	1	144	0.70
Transmembrane Helix	145	164	0.96
Cytoplasmic	165	172	0.58
Transmembrane Helix	173	200	0.85
Non-Cytoplasmic	201	233	0.70
Transmembrane Helix	234	254	0.76
Cytoplasmic	255	390	0.80