YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113531013, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.50
Transmembrane Helix	46	67	0.70
Cytoplasmic	68	75	0.66
Transmembrane Helix	76	98	0.89
Non-Cytoplasmic	99	121	0.69
Transmembrane Helix	122	144	0.90
Cytoplasmic	145	157	0.83
Transmembrane Helix	158	180	0.85
Non-Cytoplasmic	181	193	0.81
Transmembrane Helix	194	212	0.93
Cytoplasmic	213	220	0.73
Transmembrane Helix	221	242	0.91
Non-Cytoplasmic	243	258	0.87
Transmembrane Helix	259	282	0.81
Cytoplasmic	283	311	0.80
Transmembrane Helix	312	330	0.54
Non-Cytoplasmic	331	337	0.50
Transmembrane Helix	338	362	0.77
Cytoplasmic	363	365	0.40
Transmembrane Helix	366	387	0.52
Non-Cytoplasmic	388	406	0.76
Transmembrane Helix	407	427	0.87
Cytoplasmic	428	435	0.75
Transmembrane Helix	436	455	0.92
Non-Cytoplasmic	456	458	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMPEPASKP GTSTANPPHG KPQAAPSLIE RLFRLREHQT DVRTEILAGV TTFLTMAYII  60
   61 FVNPSILGDA GMPKDAVFVA TCLAAAIGTL IMGFYANYPI AMAPGMGLNA YFAYTVVKGM 120
  121 GFAWEAALGA VFISGCLFLL VTLFRVREMI VNGIPHSIRV AITAGIGLFL AIVALKNAGI 180
  181 VTASPATLVT IGDLHQPSAV LAIIGFFVIV ALDHLRVKGA ILIGILLTTL LSFAFAGNTF 240
  241 HGVFSAPPSL GPTLFKLDIS AALSIGVINV VLVFFLVELF DATGTLMGVA NRAGLLKAGK 300
  301 MDRLNKALMS DSTAIMAGSF LGTSSTTAYI ESASGVQAGG RTGLTAVTVA VLFLAALFIA 360
  361 PLAGTVPAYA TAPALLYVSC LMLRELLEID WNDVTEVVPA VMTALGMPFT YSVANGVAFG 420
  421 FISYAALKLL TGRARSVPVM VWIIAAVFIF KFYYLPGH