YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	spe-19
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFFLFFKF LKTMAENGEM KYLECYTTKE VIYDKFPKFT LEGEHTTIAT YNITHESKTG  60
   61 PPACVMFFGT NGTHSATWQG HVSSFALPLE CHINSKSYTH CFKSPNPFVF LELPNGWACC 120
  121 CSGHNCNWHN PSFFQFFERF ILDNSELFNR LKAVCKYSFC IVFCVFITIL WTIVEVLLTN 180
  181 LCEKRRKTCE ESEFEMRNKI PSSLQLQPTQ SSLKSRSGKN LSEMSLHPGS TLKVEKTQED 240
  241 DVTEPKRSEL EVASTQRSRI NKDDDFVPIP EKPEWQTTKN GRLRRTSMNY EESTYSVLQE 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	153	0.72
Transmembrane Helix	154	174	0.76
Non-Cytoplasmic	175	300	0.87