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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|148807120, gi...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNFFIDRPI FAWVIAIIIM LAGGLAILKL PVAQYPTIAP PAVTISATYP GADAKTVQDT  60
   61 VTQVIEQNMN GIDNLMYMSS NSDSTGTVQI TLTFESGTDA DIAQVQVQNK LQLAMPLLPQ 120
  121 EVQQQGVSVE KSSSSFLMVV GVINTNGTMT QEDISDYVGA NMKDAISRTS GVGDVQLFGS 180
  181 QYAMRIWMDP NKLNNFQLTP VDVISAIKAQ NAQVAAGQLG GTPPVKGQQL NASIIAQTRL 240
  241 TSADEFSKIL LKVNQDGSQV RLRDVAKVEL GGENYDIIAK FNGKPASGLG IKLATGANAL 300
  301 DTATAIRAEL KKMEPFFPSG LKIVYPYDTT PFVKISIHEV VKTLVEAIIL VFLVMYLFLQ 360
  361 NFRATLIPTI AVPVVLLGTF AVLAIFGYSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM 420
  421 AEEGLPPKEA TRKSMGQIQG ALVGIAMVLS AVFIPMAFFS GSTGAIYRQF SITIVSAMAL 480
  481 SVLVALILTP ALCATMLKPI QKGGHGEHKG FFGWFNRMFD KSTHHYTDSV GNILRSTGRY 540
  541 LLLYIIIVVG MAFLFVRLPS SFLPDEDQGV FLSMAQLPAG ATQERTQKVL DEMTDYFLTK 600
  601 EKDNVESVFA VNGFGFAGRG QNTGIAFVSL KDWSERPGAE NKVEAITGRA MGTFSHIKDA 660
  661 MVFAFNLPAI VELGTATGFD FQLIDQGGLG HEKLTQARNQ LFGEVAKHPD LLVGVRPNGL 720
  721 EDTPQYKIDI DQEKAQALGV SISDINTTLG AAWGGSYVND FIDRGRVKKV YVMSEAQYRM 780
  781 LPNDINNWYV RGSNGQMVPF SASSTSRWEY GSPRLERYNG LPSMEILGQA APGRSTGEAM 840
  841 NLMEELASKL PAGIGYDWTG MSYQERLSGN QAPALYAISL IVVFLCLAAL YESWSIPFSV 900
  901 MLVVPLGVIG ALLAATFRGL TNDVYFQVGL LTTIGLSAKN AILIVEFAKD LMEKEGKGLI 960
  961 EATLEAVRMR LRPILMTSLA FILGVMPLVI SSGAGSGAQN AVGTGVMGGM VTATVLAIFF1020
 1021 VPVFFVVVRR RFSRKNEDVE HNHPVDHH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle