YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|112182835
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKAWGVVSL ILTFCVLLYL VLWNNLSENI HSKTIIISSL ILSPLGNTNL FKTQKHLNVE  60
   61 RKVNITPIPV LYKKNFTKLP VWDFEDVYLR DSNARKPTCP KSLHNTEDPE FKESVLPDIQ 120
  121 LWLYKGQLNM SEWNRLAHFN NPFGFMEYNY NEIKRAVDLI PKPRSSILLP VPKGSKDGCI 180
  181 RCAVVGAGGI LNNSKMGREI DSHDYVFRVN GAVTKGYEED VGNRTSVYVH TAFSLYATIL 240
  241 TLKKYGFHNI PQDEGIKYVM IPEGLRDFEW LQGLLQGKAA NGSFKGVRPL NFFNGHFNES 300
  301 RFNVLHPDFL RYIRNRFMPS KQMQGNYWAM YRPTNGAFAL FLAIHTCDMV NAYGFITEDH 360
  361 HKYSNYYYEK FKKTSVIFYI NHDYGLEIKT WKKLHDSGII RLFQRH

Type	Start	End	Confidence
Signal Peptide	1	27	0.56
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	406	0.89