YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|112182833
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVQWVFRL LVVLIVSQSV CVMFFYTLDT HSHGCRMRLQ YCCNATHSLI LTKRNTAVDH  60
   61 IITYETEGKR TYRVKADLHK MLPEDSPWSA GALGLCAVVG SSGILKNSSC GRQIDSADFV 120
  121 IRFNLALVND SDVGLKTDLM NINPSQIRRY KTMEQDPGPL VERISVYGNS SLIIPAFAYG 180
  181 FCTSPSLRVL RVLQPIRPQQ PVVFFNPHYL RALDRFWKWR GLKEPRLSSG FILISAALEM 240
  241 CEHVHVYGFW PFGTDLQENP VPYHYYDQSK PSPYMHRMPE EFVRLLQLHS QGALTLHLQP 300
  301 CHHT

Type	Start	End	Confidence
Cytoplasmic	1	6	0.42
Transmembrane Helix	7	28	0.74
Non-Cytoplasmic	29	304	0.58