YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nvd-PA
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYSLFWMS LLKNNWKPIS NDFVICLWTL AVTFIRIYWI FFVPLEWKKD LDNEKWSFLR  60
   61 KTENVVCYNH KRDTINRLRK LKIQKIIELP PPYPNGWYGI LKSSQLKAGE ATCVSCLGED 120
  121 LVIFRSKKDI VFILDAYCPH LGANLGIGGS VADDCVICPF HQWKFRGTDG LCINIPYSTS 180
  181 VPKGSKLKKW ISQEVDGFIF IWYHAEQTEL PWDLPVPMGE IDDTFVYHGH NEFYINCHIQ 240
  241 EIPENGADIA HFNAIHKKNF INGSWAQKKR LFGLGSHHWK ARWSPFTGKL KYLAEVNLSH 300
  301 TFKLFGKFGC FRMEVSGKQI GPSIVCLEVN SYTFGKIKVF QYITPIEPML QKVVHEFYGP 360
  361 RWIAPLMKIF IYGESLMFER DIKIWNHKVF NRNPILAKED ASIKKFRLWF SQFYSSNSKI 420
  421 YSEATNIGW

Type	Start	End	Confidence
Cytoplasmic	1	18	0.81
Transmembrane Helix	19	40	0.87
Non-Cytoplasmic	41	429	0.88