YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90959725
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.39
Transmembrane Helix	31	56	0.84
Cytoplasmic	57	76	0.49
Transmembrane Helix	77	99	0.82
Non-Cytoplasmic	100	111	0.44
Transmembrane Helix	112	133	0.90
Cytoplasmic	134	139	0.42
Transmembrane Helix	140	158	0.76
Non-Cytoplasmic	159	177	0.58
Transmembrane Helix	178	200	0.93
Cytoplasmic	201	228	0.62
Transmembrane Helix	229	247	0.85
Non-Cytoplasmic	248	287	0.73
Transmembrane Helix	288	308	0.92
Cytoplasmic	309	319	0.76
Transmembrane Helix	320	340	0.89
Non-Cytoplasmic	341	347	0.78
Transmembrane Helix	348	372	0.86
Cytoplasmic	373	379	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLRKTHPL MKIINSSFID LPAPSNISSW WNFGSLLGIC LIIQILTGLF LAMHYTSDTM  60
   61 TAFSSVTHIC RDVNYGWLIR YLHANGASMF FICLFLHVGR GLYYGSYMFM ETWNIGVLLL 120
  121 FAVMATAFMG YVLPWGQMSF WGATVITNLL SAIPYIGSDL VQWIWGGFSV DKATLTRFFA 180
  181 FHFILPFVVA ALAGVHLLFL HETGSNNPSG LSSDADKIPF HPYYTIKDIL GVLLLVLALT 240
  241 CLVLFSPDLL GDPDNYTPAN PLNTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALVLSILI 300
  301 LAFIPLLHTS KQRSMMFRPL SQCLFWILVA DLLTLTWIGG QPVEHPFIII GQMASILYFM 360
  361 LLLVIMPITS LLENNLLKW